Table of Contents

• Using BPMN for medical guidelines that integrate with FHIR-RDFGerhard Kober, Livio Robaldo, Adrian Paschke. 1-10 [doi]
• Privacy-Preserving Dashboard for F.A.I.R Head and Neck Cancer data supporting multi-centered collaborationsVarsha Gouthamchand, Ananya Choudhury, Frank Hoebers, Frederik Wesseling, Mattea Welch, Sejin Kim, Benjamin Haibe-Kains, Joanna Kazmierska, Andre Dekker, Johan Van Soest, Leonard Wee. 11-21 [doi]
• Generating Knowledge Graph Based Explanations for Drug Repurposing PredictionsElif Ozkan, Remzi Celebi, Arif Yilmaz, Vincent Emonet, Michel Dumontier. 22-31 [doi]
• Resource Description Framework (RDF) Modeling of Named Entity Co-occurrences Derived from Biomedical Literature in the PubChemRDFQingliang Li, Sunghwan Kim 0002, Leonid Zaslavsky, Tiejun Cheng, Bo Yu, Evan E. Bolton. 32-41 [doi]
• FSO: Food Safety Monitoring OntologyArif Yilmaz, Raghavendra Naidu, Christopher Brewster. 42-51 [doi]
• Attention for Multi-Ontology Concept RecognitionLorcán Pigott-Dix, Robert P. Davey. 52-61 [doi]
• BiodivBERT: a Pre-Trained Language Model for the Biodiversity DomainNora Abdelmageed, Felicitas Löffler, Birgitta König-Ries. 62-71 [doi]
• FAIR Functional Enrichment: Assessing and Modelling Provenance in Omics ResultsYi Chen, Fons J. Verbeek, Katherine Wolstencroft. 72-81 [doi]
• Predicting missing annotations in Gene Ontology with Knowledge Graph Embeddings and True Path RuleÖzge Erten, Shervin Mehryar, Remzi Çelebi, Christopher Brewster. 82-86 [doi]
• Ontology-based expansion of virtual gene panels to improve diagnostic efficiency for rare genetic diseasesJae-Moon Shin, Toyofumi Fujiwara, Atsuko Yamaguchi. 87-91 [doi]
• Fine-Grained Named Entities for Corona NewsSefika Efeoglu, Adrian Paschke. 92-97 [doi]
• Document-to-document relevance assessment for TREC Genomics Track 2005Olga L. Giraldo, María Fernanda Cadena, Andrea Robayo-Gama, Dhwani Solanki, Tim Fellerhoff, Lukas Geist, Rohitha Ravinder, Muhammad Talha, Dietrich Rebholz-Schuhmann, Leyla Jael Castro. 98-101 [doi]
• Decentralised semantics in distributed health data ecosystems: Harmonising quantitative data from medical devices for improved insights-driven applicationsPaul Knowles, Robert Mitwicki, Michal Pietrus. 102-106 [doi]
• Surveyed common data access policies preferences amongst European Reference NetworksAlberto Cámara Ballesteros, Nirupama Benis, César Henrique Bernabé, Inés de Oliveira Coelho, Clémence M. A. Le Cornec, Aylin Demir, Bruna dos Santos Vieira, Jose Antonio Ramírez, K. Joeri van der Velde, Shuxin Zhang, Ronald Cornet, Annika Jacobsen, Marco Roos, Franz Schaefer, Morris A. Swertz, Mark D. Wilkinson. 107-111 [doi]
• Towards a Systems Pharmacology Ontology: the use of state-machines paradigmAchilleas Chytas, Nick Bassiliades, Ioannis P. Vlahavas, Pantelis Natsiavas. 112-113 [doi]
• The FAIR Data Point Populator: collaborative FAIRification and population of FAIR Data PointsDaphne Wijnbergen, Rajaram Kaliyaperumal, Marco Roos, Eleni Mina. 114-115 [doi]
• Making expert curated knowledge graphs FAIRJerven T. Bolleman, Alan Bridge, Nicole Redaschi, The UniProt Consortium. 116-117 [doi]
• Towards the use of semantic rules to prioritize patient input requests in ePRO systemsPantelis Natsiavas, Panos Bonotis. 118-119 [doi]
• To build densely connected Web of RDF dataYasunori Yamamoto, Takatomo Fujisawa. 120-121 [doi]
• Contributions to the reuse and reproducibility of computational biology modelsRon Henkel, Dagmar Waltemath. 122-123 [doi]
• Comparative analysis of protein function text-based embeddings and their applicability to prediction tasksRohitha Ravinder, Leyla Jael Castro, Martin Hofmann-Apitius, Dietrich Rebholz-Schuhmann. 124-125 [doi]
• Genome Variation Ontology for annotation of complex structural variationsShuichi Kawashima, Takatomo Fujisawa, Toshiaki Katayama. 126-127 [doi]
• Developing a semantic event search engine for biomedical eventsJulio Cesar Rangel Reyes, Norio Kobayashi. 128-129 [doi]
• FAIRification and semantic modelling for Duchenne and Becker Muscular Dystrophy rare diseasesPablo Perdomo-Quinteiro, Sergiu Siminiuc, Paraskevi Sakellariou, Marco Roos, Pietro Spitali, Núria Queralt-Rosinach. 130-132 [doi]
• MeDaX project plan: How to sustainably improve biomedical (research) data managementJudith A. H. Wodke, Ron Henkel, Dagmar Waltemath. 133-134 [doi]
• Towards Semantic Modeling of Patient Trajectories for Rehabilitation of OsteoarthritisGaetano Manzo, Benjamin Pocklington, Yvan Pannatier, Cathy Gay, Anjani Dhrangadhariya, Sophie Carrard, Roger Hilfiker, Jean-Paul Calbimonte. 135-136 [doi]
• NFDI4BIOIMAGE: Perspective for a national bioimaging standardJosh Moore, Susanne Kunis. 137-138 [doi]
• First Steps Towards the FAIRification of the DZD CORE DATASET at the German Center for Diabetes ResearchEsther Thea Inau, Angela Dedie, Ivona Anastasova, Andreas Birkenfeld, Brigitte Fröhlich, Martin Hrabe de Angelis, Michael Roden, Renate Schick, Yaroslav Zdravomyslov, Atinkut Zeleke, Dagmar Waltemath, Martin Preusse. 139-140 [doi]
• An ontology for Age-Related Macular Degeneration using ophthalmologists and language modelsAdrian Groza, Anca Marginean, Simona Delia Nicoara. 141-142 [doi]
• A Semantic Representation of the NFDI4Health Metadata Schema Utilizing the CEDAR WorkbenchMatthias Löbe, Aliaksandra Shutsko, Carsten Oliver Schmidt, Johannes Darms, Sophie Anne Ines Klopfenstein, Carina Nina Vorisek, Xiaoming Hu, Martin Golebiewski, Juliane Fluck. 143-144 [doi]
• A metadata analysis for machine-actionable Software Management PlansOlga L. Giraldo, Renato Alves, Dimitrios Bampalikis, José M. Fernández, Eva Martin Del Pico, Fotis E. Psomopoulos, Nelson Quiñones, Dhwani Solanki, Allegra Via, Leyla Jael Castro. 145-146 [doi]
• Structured review on Huntington's disease iron hypothesisKarolis Cremers, Marco Roos, Katy Wolstencroft, Eleni Mina, Núria Queralt-Rosinach. 147-148 [doi]
• Text mining genome-wide association study literatureThomas Rowlands, Tim Beck. 149-150 [doi]
• Updating the CEMO ontology for future epidemiological challengesNúria Queralt-Rosinach, Paul N. Schofield, Marco Roos, Robert Hoehndorf. 151-152 [doi]
• Visualisation and Exploration of Linked Data Using Virtual Reality - a preview of Graph2VRAlexander Kellmann, Max Postema, Joris de Keijser, Pjotr Svetachov, Becca Wilson, Esther van Enckevort, Morris A. Swertz. 153-154 [doi]
• Multilabel-classification task for Medline abstractsNelson Quiñones, Cesar Canales, Javier Torres, Dietrich Rebholz-Schuhmann, Leyla Jael Castro, Andrés Aristizábal. 155-156 [doi]
• Experiences from compiling a FAIR survey in the German Network University MedicineLea Michaelis, Rasim Atakan Poyraz, Michael Rusongoza Muzoora, Kerstin Gierend, Alexander Bartschke, Dagmar Waltemath, Sylvia Thun. 157-158 [doi]
• OntoClue, a framework to compare vector-based approaches for document relatedness using the RELISH corpusRohitha Ravinder, Tim Fellerhoff, Vishnu Dadi, Lukas Geist, Guillermo Rocamora, Muhammad Talha, Dietrich Rebholz-Schuhmann, Leyla Jael Castro. 159-160 [doi]
• Text-based phenotyping with Semantic Deep Learning: setting up experiments for women's healthMercedes Argüello Casteleiro, Niamh Joyce, Nava Maroto, Maria Jesus Fernandez Prieto, Timothy Furmston, Diego Maseda-Fernandez, Phillip Lord, Chris Wroe, John A. Keane, Ying Cheong, Robert Stevens 0001. 161-162 [doi]
• An Explainable Intervention Prediction for Trauma PatientsZoe Vasileiou, Georgios Meditskos, Stefanos Vrochidis, Nick Bassiliades. 163-164 [doi]
• FHIR-Ontop-OMOP: Querying OMOP clinical databases as FHIR-compliant Clinical Knowledge GraphsGuohui Xiao 0001, Emily R. Pfaff, Eric Prud'hommeaux, David Booth, Deepak K. Sharma, Nan Huo, Yue Yu, Nansu Zong, Kathryn J. Ruddy, Christopher G. Chute, Guoqian Jiang. 165-166 [doi]
• AgroLD: a Knowledge Graph for the Plant SciencesPierre Larmande, Bertrand Pitollat, Ndomassi Tando, Yann Pomie, Bill Happi, Valentin Guignon, Manuel Ruiz. 167-168 [doi]
• Analyze Decentralized Personal Health Data Using Solid, Digital Consent, and Federated LearningChang Sun 0001, Johan Van Soest, Michel Dumontier. 169-170 [doi]
• Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platformEwelina Grudzien, Eelke van der Horst, Frank van den Bergh, Maria H. Traka, Duncan Ng, Falk Hildebrand, Chris T. A. Evelo, Susan L. M. Coort, Duygu Dede Sener, Elisa Cirillo. 171-172 [doi]
• Towards predicting essential proteins via federated SPARQL queriesPetros Liakopoulous, Borbala Banfalvi, Xinyi Wang, Sina Majidian, Tarcisio Mendes de Farias, Christophe Dessimoz, Ana Claudia Sima. 173-174 [doi]
• A federated query between neXtProt and OrthoDB retrieves 44 uncharacterized human proteins highly expressed in the brain and conserved in Drosophila melanogasterLydie Lane, Kasun Samarasinghe, Pierre-André Michel. 175-176 [doi]
• Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasetsTarcisio Mendes de Farias, Tatsuya Kushida, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frédéric B. Bastian, Hiroshi Masuya. 177-178 [doi]
• Linking glycan and protein dataCatherine A. Hayes, Vincenzo Daponte, Frédérique Lisacek. 179-180 [doi]
• UniProt, ChEBI and IDSM Sachem: exploring biologically relevant ligandsSebastien Gehant, Elisabeth Coudert, Anne Morgat, Jerven T. Bolleman, Nicole Redaschi, Alan Bridge, The UniProt Consortium. 181-183 [doi]