Geoffrey J. Barton - researchr alias

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2011

NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteinsMichelle S. Scott, Peter V. Troshin, Geoffrey J. Barton. bmcbi, 12:317, 2011. [doi]

Java bioinformatics analysis web services for multiple sequence alignment - JABAWS: MSAPeter V. Troshin, James B. Procter, Geoffrey J. Barton. bioinformatics, 27(14):2001-2002, 2011. [doi]

2009

Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinasesDavid M. A. Martin, Diego Miranda-Saavedra, Geoffrey J. Barton. nar, 37(Database-Issue):244-250, 2009. [doi]

PIPs: human protein-protein interaction prediction databaseMark D. McDowall, Michelle S. Scott, Geoffrey J. Barton. nar, 37(Database-Issue):651-656, 2009. [doi]

Jalview Version 2 - a multiple sequence alignment editor and analysis workbenchAndrew M. Waterhouse, James B. Procter, David M. A. Martin, Michele E. Clamp, Geoffrey J. Barton. bioinformatics, 25(9):1189-1191, 2009. [doi]

2008

The Jpred 3 secondary structure prediction serverChristian Cole, Jonathan D. Barber, Geoffrey J. Barton. nar, 36(Web-Server-Issue):197-201, 2008. [doi]

The contrasting properties of conservation and correlated phylogeny in protein functional residue predictionJonathan R. Manning, Emily R. Jefferson, Geoffrey J. Barton. bmcbi, 9, 2008. [doi]

ParCrys: a Parzen window density estimation approach to protein crystallization propensity predictionIan M. Overton, Gianandrea Padovani, Mark A. Girolami, Geoffrey J. Barton. bioinformatics, 24(7):901-907, 2008. [doi]

TarO: a target optimisation system for structural biologyIan M. Overton, C. A. Johannes van Niekerk, Lester G. Carter, Alice Dawson, David M. A. Martin, Scott Cameron, Stephen A. McMahon, Malcolm F. White, William N. Hunter, James H. Naismith, Geoffrey J. Barton. nar, 36(Web-Server-Issue):190-196, 2008. [doi]

SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browserThomas P. Walsh, Caleb Webber, Stephen M. J. Searle, Shane S. Sturrock, Geoffrey J. Barton. nar, 36(Web-Server-Issue):25-29, 2008. [doi]

2007

SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein InteractionsEmily R. Jefferson, Thomas P. Walsh, Timothy J. Roberts, Geoffrey J. Barton. nar, 35(Database-Issue):580-589, 2007. [doi]

Probabilistic prediction and ranking of human protein-protein interactionsMichelle S. Scott, Geoffrey J. Barton. bmcbi, 8, 2007. [doi]

2006

Quantification of the variation in percentage identity for protein sequence alignmentsG. P. S. Raghava, Geoffrey J. Barton. bmcbi, 7:415, 2006. [doi]

MACSIMS : multiple alignment of complete sequences information management systemJulie D. Thompson, Arnaud Muller, Andrew M. Waterhouse, James B. Procter, Geoffrey J. Barton, FrÃ©dÃ©ric Plewniak, Olivier Poch. bmcbi, 7:318, 2006. [doi]

2005

Jalview: Visualization and Analysis of Molecular Sequences, Alignments, and StructuresAndrew M. Waterhouse, James B. Procter, David M. A. Martin, Geoffrey J. Barton. bmcbi, 6(S-3), 2005. [doi]

2004

The Jalview Java alignment editorMichele E. Clamp, James A. Cuff, Stephen M. J. Searle, Geoffrey J. Barton. bioinformatics, 20(3):426-427, 2004. [doi]

GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomesDavid M. A. Martin, Matthew Berriman, Geoffrey J. Barton. bmcbi, 5:178, 2004. [doi]

2003

Visual Representation of Database Search Results: The RHIMS PlotDavid M. A. Martin, Pamela Hill, Geoffrey J. Barton, Andrew J. Flavell. bioinformatics, 19(8):1037-1038, 2003.

OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracyG. P. S. Raghava, Stephen M. J. Searle, Patrick C. Audley, Jonathan D. Barber, Geoffrey J. Barton. bmcbi, 4:47, 2003. [doi]

Increased Coverage Obtained by Combination of Methods for Protein Sequence Database SearchingCaleb Webber, Geoffrey J. Barton. bioinformatics, 19(11):1397-1403, 2003.

2001

3Dee: a database of protein structural domainsAsim S. Siddiqui, Uwe Dengler, Geoffrey J. Barton. bioinformatics, 17(1):200-201, 2001.

Estimation of P-values for global alignments of protein sequencesCaleb Webber, Geoffrey J. Barton. bioinformatics, 17(12):1158-1167, 2001.

2000

ProtEST: protein multiple sequence alignments from expressed sequence tagsJames A. Cuff, Ewan Birney, Michele E. Clamp, Geoffrey J. Barton. bioinformatics, 16(2):111-116, 2000.

1998

JPred: a consensus secondary structure prediction serverJames A. Cuff, Michele E. Clamp, Asim S. Siddiqui, M. Finlay, Geoffrey J. Barton. bioinformatics, 14(10):892-893, 1998.

1995

Protein fold recognition from secondary structure assignmentsRobert B. Russell, R. R. Copley, Geoffrey J. Barton. hicss 1995: 302-311 [doi]

1993

An efficient algorithm to locate all locally optimal alignments between two sequences allowing for gapsGeoffrey J. Barton. bioinformatics, 9(6):729-734, 1993.

Protein sequence alignments: a strategy for the hierarchical analysis of residue conservationC. D. Livingstone, Geoffrey J. Barton. bioinformatics, 9(6):745-756, 1993.

1991

Scanning protein sequence databanks using a distributed processing workstation networkGeoffrey J. Barton. bioinformatics, 7(1):85-88, 1991.