Geoffrey J. Barton - researchr alias

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Viewing Publication 1 - 46 from 46

2022

Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variantsStuart A. MacGowan, Michael I. Barton, Mikhail Kutuzov, Omer Dushek, P. Anton van der Merwe, Geoffrey J. Barton. ploscb, 18(3), 2022. [doi]

PDBe-KB: collaboratively defining the biological context of structural dataMihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda 0001, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar. nar, 50(D1):534-542, 2022. [doi]

2021

Ankyrin repeats in context with human population variationJavier S. Utgés, Maxim I. Tsenkov, Noah J. M. Dietrich, Stuart A. MacGowan, Geoffrey J. Barton. ploscb, 17(8), 2021. [doi]

2020

PDBe-KB: a community-driven resource for structural and functional annotationsMihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath S. Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan 0001, Henry J. Martell, Stuart Macgowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda 0001, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar. nar, 48(Database-Issue), 2020. [doi]

2019

2018

JABAWS 2.2 distributed web services for Bioinformatics: protein disorder, conservation and RNA secondary structurePeter V. Troshin, James B. Procter, Alexander Sherstnev, Daniel L. Barton, Fábio Madeira, Geoffrey J. Barton. bioinformatics, 34(11):1939-1940, 2018. [doi]

2016

AlmostSignificant: simplifying quality control of high-throughput sequencing dataJoseph Ward, Christian Cole, Melanie Febrer, Geoffrey J. Barton. bioinformatics, 32(24):3850-3851, 2016. [doi]

2015

2011

2010

Human protein-protein interaction predictionMark D. McDowall, Michelle S. Scott, Geoffrey J. Barton. bmcbi, 11(S-10), 2010. [doi]

2009

2008

The Jpred 3 secondary structure prediction serverChristian Cole, Jonathan D. Barber, Geoffrey J. Barton. nar, 36(Web-Server-Issue):197-201, 2008. [doi]

The contrasting properties of conservation and correlated phylogeny in protein functional residue predictionJonathan R. Manning, Emily R. Jefferson, Geoffrey J. Barton. bmcbi, 9, 2008. [doi]

ParCrys: a Parzen window density estimation approach to protein crystallization propensity predictionIan M. Overton, Gianandrea Padovani, Mark A. Girolami, Geoffrey J. Barton. bioinformatics, 24(7):901-907, 2008. [doi]

TarO: a target optimisation system for structural biologyIan M. Overton, C. A. Johannes van Niekerk, Lester G. Carter, Alice Dawson, David M. A. Martin, Scott Cameron, Stephen A. McMahon, Malcolm F. White, William N. Hunter, James H. Naismith, Geoffrey J. Barton. nar, 36(Web-Server-Issue):190-196, 2008. [doi]

SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browserThomas P. Walsh, Caleb Webber, Stephen M. J. Searle, Shane S. Sturrock, Geoffrey J. Barton. nar, 36(Web-Server-Issue):25-29, 2008. [doi]

2007

2006

Quantification of the variation in percentage identity for protein sequence alignmentsG. P. S. Raghava, Geoffrey J. Barton. bmcbi, 7:415, 2006. [doi]

MACSIMS : multiple alignment of complete sequences information management systemJulie D. Thompson, Arnaud Muller, Andrew M. Waterhouse, James B. Procter, Geoffrey J. Barton, FrÃ©dÃ©ric Plewniak, Olivier Poch. bmcbi, 7:318, 2006. [doi]

2005

Jalview: Visualization and Analysis of Molecular Sequences, Alignments, and StructuresAndrew M. Waterhouse, James B. Procter, David M. A. Martin, Geoffrey J. Barton. bmcbi, 6(S-3), 2005. [doi]

2004

The Jalview Java alignment editorMichele E. Clamp, James A. Cuff, Stephen M. J. Searle, Geoffrey J. Barton. bioinformatics, 20(3):426-427, 2004. [doi]

GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomesDavid M. A. Martin, Matthew Berriman, Geoffrey J. Barton. bmcbi, 5:178, 2004. [doi]

2003

Visual Representation of Database Search Results: The RHIMS PlotDavid M. A. Martin, Pamela Hill, Geoffrey J. Barton, Andrew J. Flavell. bioinformatics, 19(8):1037-1038, 2003.

OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracyG. P. S. Raghava, Stephen M. J. Searle, Patrick C. Audley, Jonathan D. Barber, Geoffrey J. Barton. bmcbi, 4:47, 2003. [doi]

Increased Coverage Obtained by Combination of Methods for Protein Sequence Database SearchingCaleb Webber, Geoffrey J. Barton. bioinformatics, 19(11):1397-1403, 2003.

2001

3Dee: a database of protein structural domainsAsim S. Siddiqui, Uwe Dengler, Geoffrey J. Barton. bioinformatics, 17(1):200-201, 2001.

Estimation of P-values for global alignments of protein sequencesCaleb Webber, Geoffrey J. Barton. bioinformatics, 17(12):1158-1167, 2001.

2000

ProtEST: protein multiple sequence alignments from expressed sequence tagsJames A. Cuff, Ewan Birney, Michele E. Clamp, Geoffrey J. Barton. bioinformatics, 16(2):111-116, 2000.

1998

JPred: a consensus secondary structure prediction serverJames A. Cuff, Michele E. Clamp, Asim S. Siddiqui, M. Finlay, Geoffrey J. Barton. bioinformatics, 14(10):892-893, 1998.

1995

Protein fold recognition from secondary structure assignmentsRobert B. Russell, R. R. Copley, Geoffrey J. Barton. hicss 1995: 302-311 [doi]

1993

An efficient algorithm to locate all locally optimal alignments between two sequences allowing for gapsGeoffrey J. Barton. bioinformatics, 9(6):729-734, 1993.

Protein sequence alignments: a strategy for the hierarchical analysis of residue conservationC. D. Livingstone, Geoffrey J. Barton. bioinformatics, 9(6):745-756, 1993.

1991

Scanning protein sequence databanks using a distributed processing workstation networkGeoffrey J. Barton. bioinformatics, 7(1):85-88, 1991.

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