Franca Fraternali - researchr alias

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Viewing Publication 1 - 12 from 12

2022

PDBe-KB: collaboratively defining the biological context of structural dataMihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda 0001, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar. nar, 50(D1):534-542, 2022. [doi]

2020

PDBe-KB: a community-driven resource for structural and functional annotationsMihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath S. Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan 0001, Henry J. Martell, Stuart Macgowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda 0001, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar. nar, 48(Database-Issue), 2020. [doi]

2018

BRepertoire: a user-friendly web server for analysing antibody repertoire dataChristian Margreitter, Hui-Chun Lu, Catherine Townsend, Alexander Stewart, Deborah K. Dunn-Walters, Franca Fraternali. nar, 46(Webserver-Issue), 2018. [doi]

In silico identification of rescue sites by double force scanningMatteo Tiberti, Alessandro Pandini, Franca Fraternali, Arianna Fornili. bioinformatics, 34(2):207-214, 2018. [doi]

2017

TITINdb - a computational tool to assess titin's role as a disease geneAnna Laddach, Mathias Gautel, Franca Fraternali. bioinformatics, 33(21):3482-3485, 2017. [doi]

2016

PinSnps: structural and functional analysis of SNPs in the context of protein interaction networksHui-Chun Lu, Julián Herrera Braga, Franca Fraternali. bioinformatics, 32(16):2534-2536, 2016. [doi]

2013

GSATools: analysis of allosteric communication and functional local motions using a structural alphabetAlessandro Pandini, Arianna Fornili, Franca Fraternali, Jens Kleinjung. bioinformatics, 29(16):2053-2055, 2013. [doi]

2008

Multi-Scale Simulations Provide Supporting Evidence for the Hypothesis of Intramolecular Protein Translocation in GroEL/GroES ComplexesIvan Coluzza, Alfonso De Simone, Franca Fraternali, Daan Frenkel. ploscb, 4(2), 2008. [doi]

2007

MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP databaseAlessandro Pandini, Laura Bonati, Franca Fraternali, Jens Kleinjung. bioinformatics, 23(4):515-516, 2007. [doi]

2005

POPSCOMP: an automated interaction analysis of biomolecular complexesJens Kleinjung, Franca Fraternali. nar, 33(Web-Server-Issue):342-346, 2005. [doi]

2003

POPS: a fast algorithm for solvent accessible surface areas at atomic and residue levelLuigi Cavallo, Jens Kleinjung, Franca Fraternali. nar, 31(13):3364-3366, 2003.

2002

Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosomeFranca Fraternali, Luigi Cavallo. nar, 30(13):2950-2960, 2002.

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