Martijn A. Huynen - researchr alias

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Viewing Publication 1 - 28 from 28

2023

Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolutionJoeri Van Strien, Felix Evers, Madhurya Lutikurti, Stijn L. Berendsen, Alejandro Garanto, Geert-Jan van Gemert, Alfredo Cabrera-Orefice, Richard J. Rodenburg, Ulrich Brandt, Taco W. A. Kooij, Martijn A. Huynen. ploscb, 19(8), 2023. [doi]

2021

Novel insights from the Plasmodium falciparum sporozoite-specific proteome by probabilistic integration of 26 studiesLisette Meerstein-Kessel, Jeron Venhuizen, Daniel Garza, Nicolas Pröllochs, Emma J. Vos, Joshua M. Obiero, Philip L. Felgner, Robert W. Sauerwein, Marynthe Peters, Annie S. P. Yang, Martijn A. Huynen. ploscb, 17(4), 2021. [doi]

2019

COmplexome Profiling ALignment (COPAL) reveals remodeling of mitochondrial protein complexes in Barth syndromeJoeri Van Strien, Sergio Guerrero-Castillo, Iliana A Chatzispyrou, Riekelt H. Houtkooper, Ulrich Brandt, Martijn A. Huynen. bioinformatics, 35(17):3083-3091, 2019. [doi]

2016

WeGET: predicting new genes for molecular systems by weighted co-expressionRadek Szklarczyk, Wout Megchelenbrink, Pavel Cizek, Marie Ledent, Gonny Velemans, Damian Szklarczyk, Martijn A. Huynen. nar, 44(Database-Issue):567-573, 2016. [doi]

2015

2013

Inferring Metabolic States in Uncharacterized Environments Using Gene-Expression MeasurementsSergio Rossell, Martijn A. Huynen, Richard A. Notebaart. ploscb, 9(3), 2013. [doi]

2011

2010

Measuring the physical cohesiveness of proteins using physical interaction enrichmentIziah Edwin Sama, Martijn A. Huynen. bioinformatics, 26(21):2737-2743, 2010. [doi]

2009

Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assemblyBas E. Dutilh, Martijn A. Huynen, Marc Strous. bioinformatics, 25(21):2878-2881, 2009. [doi]

2008

Signature, a web server for taxonomic characterization of sequence samples using signature genesBas E. Dutilh, Ying He, Maarten L. Hekkelman, Martijn A. Huynen. nar, 36(Web-Server-Issue):470-474, 2008. [doi]

Conserved co-expression for candidate disease gene prioritizationMartin Oti, Jeroen van Reeuwijk, Martijn A. Huynen, Han G. Brunner. bmcbi, 9, 2008. [doi]

2007

Assessment of phylogenomic and orthology approaches for phylogenetic inferenceB. E. Dutilh, Vera van Noort, René T. J. M. van der Heijden, T. Boekhout, Berend Snel, Martijn A. Huynen. bioinformatics, 23(7):815-824, 2007. [doi]

From Endosymbiont to Host-Controlled Organelle: The Hijacking of Mitochondrial Protein Synthesis and MetabolismToni Gabaldón, Martijn A. Huynen. ploscb, 3(11), 2007. [doi]

Optimized design and assessment of whole genome tiling arraysStefan Gräf, Fiona G. G. Nielsen, Stefan Kurtz, Martijn A. Huynen, Ewan Birney, Henk Stunnenberg, Paul Flicek. ismb 2007: 195-204 [doi]

Optimising oligonucleotide array design for ChIP-on-chipFiona G. G. Nielsen, Stefan Gräf, Xinmin Zhang, Stefan Kurtz, Sergei Denissov, Roland Green, Ewan Birney, Paul Flicek, Martijn A. Huynen, Henk Stunnenberg. bmcbi, 8(S-8), 2007. [doi]

Orthology prediction at scalable resolution by phylogenetic tree analysisRené T. J. M. van der Heijden, Berend Snel, Vera van Noort, Martijn A. Huynen. bmcbi, 8, 2007. [doi]

2005

2004

Prokaryotic diversity of the Saccharomyces cerevisiae Atx1p-mediated copper pathwayHarm van Bakel, Martijn A. Huynen, Cisca Wijmenga. bioinformatics, 20(16):2644-2655, 2004. [doi]

2003

STRING: a database of predicted functional associations between proteinsChristian von Mering, Martijn A. Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, Berend Snel. nar, 31(1):258-261, 2003.

1998

Pathway alignment: Application in the comparative analysis of glycolysisThomas Dandekar, Stefan Schuster, Martijn A. Huynen, Peer Bork. gcb 1998:

1996

Knowledge Discovery in RNA Sequence Families of HIV Using Scalable ComputersIvo L. Hofacker, Martijn A. Huynen, Peter F. Stadler, Paul E. Stolorz. kdd 1996: 20-25

Base Pairing Probabilities in a Complete HIV-1 RNAMartijn A. Huynen, Alan S. Perelson, W. A. Vieira, Peter F. Stadler. jcb, 3(2):253-274, 1996.

1989

Genetic Algorithms and Information Accumulation during the Evolution of Gene RegulationMartijn A. Huynen, Paulien Hogeweg. icga 1989: 225-230

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2009

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1998

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1989

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