Shinichi Morishita - researchr alias

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Viewing Publication 1 - 70 from 70

2023

Decomposing mosaic tandem repeats accurately from long readsBansho Masutani, Riki Kawahara, Shinichi Morishita. bioinformatics, 39(4), April 2023. [doi]

2021

Investigating the mitochondrial genomic landscape of Arabidopsis thaliana by long-read sequencingBansho Masutani, Shin-ichi Arimura, Shinichi Morishita. ploscb, 17(1), 2021. [doi]

Finding long tandem repeats in long noisy readsShinichi Morishita, Kazuki Ichikawa, Eugene W. Myers. bioinformatics, 37(5):612-621, 2021. [doi]

2020

HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-CRyo Nakabayashi, Shinichi Morishita. bioinformatics, 36(13):3966-3974, 2020. [doi]

2019

A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computerBansho Masutani, Shinichi Morishita. bioinformatics, 35(4):584-592, 2019. [doi]

A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computerBansho Masutani, Shinichi Morishita. bioinformatics, 35(8):1443, 2019. [doi]

2016

2015

A linear time algorithm for detecting long genomic regions enriched with a specific combination of epigenetic statesKazuki Ichikawa, Shinichi Morishita. bmcgenomics, 16(S-2), 2015. [doi]

2014

2011

Invited: Searching massive epigenome data for evolutionarily conserved sequence motifsShinichi Morishita. iccabs 2011: 7 [doi]

Poster: Robust estimation of DNA methylation with local regressionAtsushi Sasaki, Shinichi Morishita. iccabs 2011: 259 [doi]

2009

2008

2007

Efficient Integration of Structure Indexes of XMLTaro L. Saito, Shinichi Morishita. dasfaa 2007: 781-792 [doi]

2006

Amoeba Join: Overcoming Structural Fluctuations in XML DataTaro L. Saito, Shinichi Morishita. webdb 2006: [doi]

PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genomeTomoyuki Yamada, Haruhiko Soma, Shinichi Morishita. nar, 34(Web-Server-Issue):665-669, 2006. [doi]

2005

5 SAGE: 5 -end Serial Analysis of Gene Expression databaseYasuhiro Kasai, Shin-ichi Hashimoto, Tomoyuki Yamada, Jun Sese, Sumio Sugano, Kouji Matsushima, Shinichi Morishita. nar, 33(Database-Issue):550-552, 2005. [doi]

dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interferenceYuki Naito, Tomoyuki Yamada, Takahiro Matsumiya, Kumiko Ui-Tei, Kaoru Saigo, Shinichi Morishita. nar, 33(Web-Server-Issue):589-591, 2005. [doi]

Data mining tools for the ::::Saccharomyces cerevisiae:::: morphological databaseTaro L. Saito, Jun Sese, Yoichiro Nakatani, Fumi Sano, Masashi Yukawa, Yoshikazu Ohya, Shinichi Morishita. nar, 33(Web-Server-Issue):753-757, 2005. [doi]

Accelerated off-target search algorithm for siRNATomoyuki Yamada, Shinichi Morishita. bioinformatics, 21(8):1316-1324, 2005. [doi]

2004

siDirect: highly effective, target-specific siRNA design software for mammalian RNA interferenceYuki Naito, Tomoyuki Yamada, Kumiko Ui-Tei, Shinichi Morishita, Kaoru Saigo. nar, 32(Web-Server-Issue):124-129, 2004.

Development of Image Processing Program for Yeast Cell MorphologyMiwaka Ohtani, Ayaka Saka, Fumi Sano, Yoshikazu Ohya, Shinichi Morishita. jbcb, 1(4):695-710, 2004. [doi]

SCMD: Saccharomyces cerevisiae Morphological DatabaseTaro L. Saito, Miwaka Ohtani, Hiroshi Sawai, Fumi Sano, Ayaka Saka, Daisuke Watanabe, Masashi Yukawa, Yoshikazu Ohya, Shinichi Morishita. nar, 32(Database-Issue):319-322, 2004.

Constrained clusters of gene expression profiles with pathological featuresJun Sese, Yukinori Kurokawa, Morito Monden, Kikuya Kato, Shinichi Morishita. bioinformatics, 20(17):3137-3145, 2004. [doi]

Itemset Classified ClusteringJun Sese, Shinichi Morishita. pkdd 2004: 398-409 [doi]

Computing Highly Specific and Noise-tolerant Oligomers EfficientlyTomoyuki Yamada, Shinichi Morishita. jbcb, 2(1):21-46, 2004. [doi]

Report on BIOKDD04: workshop on data mining in BioinformaticsMohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos. sigkdd, 6(2):153-154, 2004. [doi]

2003

PrefaceSetsuo Arikawa, Koichi Furukawa, Shinichi Morishita, Hiroshi Motoda. TCS, 292(2):343-344, 2003.

A Fast and Sensitive Algorithm for Aligning Ests to the Human GenomeJun Ogasawara, Shinichi Morishita. jbcb, 1(2):363-386, 2003. [doi]

Computing Highly Specific and Mismatch Tolerant Oligomers EfficientlyTomoyuki Yamada, Shinichi Morishita. csb 2003: 316-325 [doi]

2002

2001

2000

BodyMap: a human and mouse gene expression databaseTeruyoshi Hishiki, Shoko Kawamoto, Shinichi Morishita, Kousaku Okubo. nar, 28(1):136-138, 2000.

Traversing Itemset Lattice with Statistical Metric PruningShinichi Morishita, Jun Sese. PODS 2000: 226-236 [doi]

1999

1998

On Classification and RegressionShinichi Morishita. dis 1998: 40-57 [doi]

1997

Efficient Construction of Regression Trees with Range and Region SplittingYasuhiko Morimoto, Hiromu Ishii, Shinichi Morishita. VLDB 1997: 166-175 [doi]

Avoiding Cartesian products for multiple joinsShinichi Morishita. JACM, 44(1):57-85, 1997. [doi]

Computing Optimized Rectilinear Regions for Association RulesKunikazu Yoda, Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama. kdd 1997: 96-103

1996

Constructing Efficient Decision Trees by Using Optimized Numeric Association RulesTakeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama. VLDB 1996: 146-155 [doi]

SONAR: System for Optimized Numeric AssociationRulesTakeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama. SIGMOD 1996: 553 [doi]

Mining Optimized Association Rules for Numeric AttributesTakeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama. PODS 1996: 182-191 [doi]

Data Mining Using Two-Dimensional Optimized Accociation Rules: Scheme, Algorithms, and VisualizationTakeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama. SIGMOD 1996: 13-23 [doi]

Interval Finding and Its Application to Data MiningTakeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama. isaac 1996: 55-64

An Extension of Van Gelder s Alternating Fixpoint to Magic ProgramsShinichi Morishita. jcss, 52(3):506-521, 1996.

1994

The Glue-Nail Deductive Database System: Design, Implementation, and EvaluationMarcia A. Derr, Shinichi Morishita, Geoffrey Phipps. vldb, 3(2):123-160, 1994. [doi]

1993

Design and Implementation of the Glue-Nail Database SystemMarcia A. Derr, Shinichi Morishita, Geoffrey Phipps. SIGMOD 1993: 147-156 [doi]

An Alternating Fixpoint Tailored to Magic ProgramsShinichi Morishita. PODS 1993: 123-134 [doi]

1992

An anternating fixpoint tailored to magic programsShinichi Morishita. deductive 1992: 86-95

Avoiding Cartesian Products in Programs for Multiple JoinsShinichi Morishita. PODS 1992: 368-379 [doi]

1988

Lattice Programming MethodologyKouichi Fukunaga, Shinichi Morishita. lp 1989: 96-107

1987

Symbolical Construction of Truth Value Domain for Logic ProgramShinichi Morishita, Masayuki Numao, Shin ichi Hirose. ICLP 1987: 533-555

1986

Prolog Computation Model BPM and its Debugger PROEDIT2Shinichi Morishita, Masayuki Numao. lp 1987: 147-158

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