Bauke Ylstra - researchr alias

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Viewing Publication 1 - 12 from 12

2020

The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for researchDavid Salgado, Irina M. Armean, Michael Baudis, Sergi Beltran, Salvador Capella-Gutiérrez, Denise Carvalho-Silva, Victoria Dominguez Del Angel, Joaquín Dopazo, Laura I. Furlong, Bo Gao, Leyla Jael García-Castro, Dietlind Gerloff, Ivo Gut, Attila Gyenesei, Nina Habermann, John M. Hancock, Marc Hanauer, Eivind Hovig, Lennart F. Johansson, Thomas Keane, Jan Korbel, Katharina B. Lauer, Steve Laurie, Brane Leskosek, David Lloyd, Tomàs Marquès-Bonet, Hailiang Mei, Katalin Monostory, Janet Piñero, Krzysztof Poterlowicz, Ana Rath, Pubudu Samarakoon, Ferran Sanz, Gary Saunders, Daoud Sie, Morris A. Swertz, Kirill Tsukanov, Alfonso Valencia, Marko Vidak, Cristina Yenyxe González, Bauke Ylstra, Christophe Béroud. f1000research, 9:1229, 2020. [doi]

2019

ACE: absolute copy number estimation from low-coverage whole-genome sequencing dataJos B. Poell, Matias Mendeville, Daoud Sie, Arjen Brink, Ruud H. Brakenhoff, Bauke Ylstra. bioinformatics, 35(16):2847-2849, 2019. [doi]

2016

GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genesEvert van den Broek, Stef van Lieshout, Christian Rausch, Bauke Ylstra, Mark A. van de Wiel, Gerrit A. Meijer, Remond J. A. Fijneman, Sanne Abeln. f1000research, 5:2340, 2016. [doi]

2012

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analysesWessel N. van Wieringen, Kristian Unger, Gwenaël G. R. Leday, Oscar Krijgsman, Renée X. de Menezes, Bauke Ylstra, Mark A. van de Wiel. bmcbi, 13:80, 2012. [doi]

2011

Preprocessing and downstream analysis of microarray DNA copy number profilesMark A. van de Wiel, Franck Picard, Wessel N. van Wieringen, Bauke Ylstra. bib, 12(1):10-21, 2011. [doi]

2010

CGHpower: exploring sample size calculations for chromosomal copy number experimentsIlari Scheinin, Jose A. Ferreira, Sakari Knuutila, Gerrit Meijer, Mark A. van de Wiel, Bauke Ylstra. bmcbi, 11:331, 2010. [doi]

2009

Smoothing waves in array CGH tumor profilesMark A. van de Wiel, Rebecca Brosens, Paul H. C. Eilers, Candy Kumps, Gerrit Meijer, Björn Menten, Erik Sistermans, Frank Speleman, Marieke E. Timmerman, Bauke Ylstra. bioinformatics, 25(9):1099-1104, 2009. [doi]

2007

CGHcall: calling aberrations for array CGH tumor profilesMark A. van de Wiel, Kyung In Kim, Sjoerd J. Vosse, Wessel N. van Wieringen, Saskia M. Wilting, Bauke Ylstra. bioinformatics, 23(7):892-894, 2007. [doi]

2006

ACE-it: a tool for genome-wide integration of gene dosage and RNA expression dataWessel N. van Wieringen, Jeroen A. M. Belien, Sjoerd J. Vosse, Eskeatnaf M. Achame, Bauke Ylstra. bioinformatics, 22(15):1919-1920, 2006. [doi]

2005

CGHMultiArray: exact P-values for multi-array comparative genomic hybridization dataMark A. van de Wiel, Serge J. Smeets, Ruud H. Brakenhoff, Bauke Ylstra. bioinformatics, 21(14):3193-3194, 2005. [doi]

2004

Breakpoint identification and smoothing of array comparative genomic hybridization dataKees Jong, Elena Marchiori, Gerrit Meijer, Aad van der Vaart, Bauke Ylstra. bioinformatics, 20(18):3636-3637, 2004. [doi]

2003

Chromosomal Breakpoint Detection in Human CancerKees Jong, Elena Marchiori, Aad van der Vaart, Bauke Ylstra, Marjan Weiss, Gerrit Meijer. evoW 2003: 54-65 [doi]

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