Casey M. Bergman - researchr alias

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Viewing Publication 1 - 17 from 17

2012

BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular eventsMartin Gerner, Farzaneh Sarafraz, Casey M. Bergman, Goran Nenadic. bioinformatics, 28(16):2154-2161, 2012. [doi]

2011

2010

LINNAEUS: A species name identification system for biomedical literatureMartin Gerner, Goran Nenadic, Casey M. Bergman. bmcbi, 11:85, 2010. [doi]

An Exploration of Mining Gene Expression Mentions and Their Anatomical Locations from Biomedical TextMartin Gerner, Goran Nenadic, Casey M. Bergman. bionlp 2010: 72-80 [doi]

2009

Assigning roles to protein mentions: The case of transcription factorsHui Yang, John A. Keane, Casey M. Bergman, Goran Nenadic. jbi, 42(5):887-894, 2009. [doi]

2008

REDfly 2.0: an integrated database of ::::cis::::-regulatory modules and transcription factor binding sites in ::::Drosophila::::Marc S. Halfon, Steven M. Gallo, Casey M. Bergman. nar, 36(Database-Issue):594-598, 2008. [doi]

2007

Discovering and detecting transposable elements in genome sequencesCasey M. Bergman, Hadi Quesneville. bib, 8(6):382-392, 2007. [doi]

Drosophila melanogasterThomas A. Down, Casey M. Bergman, Jing Su, Tim J. P. Hubbard. ploscb, 3(1), 2007. [doi]

2006

ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variationStephen Montgomery, Obi L. Griffith, Monica C. Sleumer, Casey M. Bergman, Misha Bilenky, Erin Pleasance, Y. Prychyna, X. Zhang, Steven J. M. Jones. bioinformatics, 22(5):637-640, 2006. [doi]

Identifying ::::cis::::-regulatory modules by combining comparative and compositional analysis of DNANora Pierstorff, Casey M. Bergman, Thomas Wiehe. bioinformatics, 22(23):2858-2864, 2006. [doi]

2005

Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogasterCasey M. Bergman, Joseph W. Carlson, Susan E. Celniker. bioinformatics, 21(8):1747-1749, 2005. [doi]

Combined Evidence Annotation of Transposable Elements in Genome SequencesHadi Quesneville, Casey M. Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabéhère. ploscb, 1(2), 2005. [doi]

2004

Correction: Benchmarking tools for the alignment of functional noncodingDNADaniel A. Pollard, Casey M. Bergman, Jens Stoye, Susan E. Celniker, Michael B. Eisen. bmcbi, 5:73, 2004. [doi]

Benchmarking tools for the alignment of functional noncoding DNADaniel A. Pollard, Casey M. Bergman, Jens Stoye, Susan E. Celniker, Michael B. Eisen. bmcbi, 5:6, 2004. [doi]

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