Chen Li 0021 - researchr alias

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Viewing Publication 1 - 14 from 14

2023

ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three speciesRuyi Chen, Fuyi Li, Xudong Guo, Yue Bi, Chen Li 0021, Shirui Pan, Lachlan J. M. Coin, Jiangning Song. bib, 24(3), May 2023. [doi]

VPatho: a deep learning-based two-stage approach for accurate prediction of gain-of-function and loss-of-function variantsFang Ge, Chen Li 0021, Shahid Iqbal, Muhammad Arif 0012, Fuyi Li, Maha A. Thafar, Zihao Yan, Apilak Worachartcheewan, Xiaofeng Xu, Jiangning Song, Dong-jun Yu. bib, 24(1), January 2023. [doi]

PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationshipsTong Pan, Chen Li 0021, Yue Bi, Zhikang Wang, Robin B. Gasser, Anthony W. Purcell, Tatsuya Akutsu, Geoffrey I. Webb, Seiya Imoto, Jiangning Song. bioinformatics, 39(3), March 2023. [doi]

iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activitiesJing Xu, Fuyi Li, Chen Li 0021, Xudong Guo, Cornelia Landersdorfer, Hsin-Hui Shen, Anton Y. Peleg, Jian Li, Seiya Imoto, Jianhua Yao 0001, Tatsuya Akutsu, Jiangning Song. bib, 24(4), July 2023. [doi]

Multi-modality data-driven analysis of diagnosis and treatment of psoriatic arthritisJing Xu, Jiarui Ou, Chen Li 0021, Zheng Zhu, Jian Li, Hailun Zhang, Junchen Chen, Bin Yi, Wu Zhu, Weiru Zhang, Guanxiong Zhang, Qian Gao, Yehong Kuang, Jiangning Song, Xiang Chen, Hong Liu. npjdm, 6, 2023. [doi]

2022

Multi-Scale Coarse-to-Fine Transformer for Frame InterpolationChen Li 0021, Li Song 0001, Xueyi Zou, Jiaming Guo, Youliang Yan, Wenjun Zhang. mm 2022: 5201-5209 [doi]

SimCTC: A Simple Contrast Learning Method of Text Clustering (Student Abstract)Chen Li 0021, Xiaoguang Yu, Shuangyong Song, Jia Wang, Bo Zou, Xiaodong He. AAAI 2022: 12997-12998 [doi]

Positive-unlabeled learning in bioinformatics and computational biology: a brief reviewFuyi Li, Shuangyu Dong, André Leier, Meiya Han, Xudong Guo, Jing Xu, Xiaoyu Wang, Shirui Pan, Cangzhi Jia, Yang Zhang 0010, Geoffrey I. Webb, Lachlan J. M. Coin, Chen Li 0021, Jiangning Song. bib, 23(1), 2022. [doi]

PCfun: a hybrid computational framework for systematic characterization of protein complex functionVarun S. Sharma, Andrea Fossati, Rodolfo Ciuffa, Marija Buljan, Evan G. Williams, Zhen Chen, Wenguang Shao, Patrick G. A. Pedrioli, Anthony W. Purcell, María Rodríguez Martínez, Jiangning Song, Matteo Manica, Ruedi Aebersold, Chen Li 0021. bib, 23(4), 2022. [doi]

Critical assessment of computational tools for prokaryotic and eukaryotic promoter predictionMeng Zhang, Cangzhi Jia, Fuyi Li, Chen Li 0021, Yan Zhu, Tatsuya Akutsu, Geoffrey I. Webb, Quan Zou 0001, Lachlan J. M. Coin, Jiangning Song. bib, 23(2), 2022. [doi]

2019

Large-scale comparative assessment of computational predictors for lysine post-translational modification sitesZhen Chen, Xuhan Liu, Fuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li 0013, Kuo-Chen Chou, Jiangning Song. bib, 20(6):2267-2290, 2019. [doi]

Positive-unlabelled learning of glycosylation sites in the human proteomeFuyi Li, Yang Zhang 0010, Anthony W. Purcell, Geoffrey I. Webb, Kuo-Chen Chou, Trevor Lithgow, Chen Li 0021, Jiangning Song. bmcbi, 20(1), 2019. [doi]

2018

Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteomeFuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Anthony W. Purcell, A. Ian Smith, Trevor Lithgow, Roger J. Daly, Jiangning Song, Kuo-Chen Chou. bioinformatics, 34(24):4223-4231, 2018. [doi]

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