David M. Kristensen - researchr alias

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Viewing Publication 1 - 13 from 13

2019

Microbial genome analysis: the COG approachMichael Y. Galperin, David M. Kristensen, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin. bib, 20(4):1063-1070, 2019. [doi]

2017

Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotationAna Laura Grazziotin, Eugene V. Koonin, David M. Kristensen. nar, 45(Database-Issue), 2017. [doi]

ATGC database and ATGC-COGs: an updated resource for micro- and macro-evolutionary studies of prokaryotic genomes and protein family annotationDavid M. Kristensen, Yuri I. Wolf, Eugene V. Koonin. nar, 45(Database-Issue), 2017. [doi]

2015

A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaeaDavid M. Kristensen, Usman Saeed, Dmitrij Frishman, Eugene V. Koonin. bmcbi, 16:380, 2015. [doi]

2011

Computational methods for Gene Orthology inferenceDavid M. Kristensen, Yuri I. Wolf, Arcady R. Mushegian, Eugene V. Koonin. bib, 12(5):379-391, 2011. [doi]

2010

A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matchesDavid M. Kristensen, Lavanya Kannan, Michael K. Coleman, Yuri I. Wolf, Alexander Sorokin, Eugene V. Koonin, Arcady R. Mushegian. bioinformatics, 26(12):1481-1487, 2010. [doi]

2009

Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templatesR. Matthew Ward, Eric Venner, Bryce Daines, Stephen Murray, Serkan Erdin, David M. Kristensen, Olivier Lichtarge. bioinformatics, 25(11):1426-1427, 2009. [doi]

2008

Prediction of enzyme function based on 3D templates of evolutionarily important amino acidsDavid M. Kristensen, R. Matthew Ward, Andreas Martin Lisewski, Serkan Erdin, Brian Y. Chen, Viacheslav Fofanov, Marek Kimmel, Lydia E. Kavraki, Olivier Lichtarge. bmcbi, 9, 2008. [doi]

2007

2006

Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function PredictionBrian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki. recomb 2006: 500-515 [doi]

ET viewer: an application for predicting and visualizing functional sites in protein structuresDaniel H. Morgan, David M. Kristensen, David Mittelman, Olivier Lichtarge. bioinformatics, 22(16):2049-2050, 2006. [doi]

2005

Algorithms for Structural Comparison and Statistical Analysis of 3D Protein MotifsBrian Y. Chen, Viacheslav Fofanov, David M. Kristensen, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki. psb 2005: [doi]

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