Goro Terai - researchr alias

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Viewing Publication 1 - 13 from 13

2025

PseudoknotVisualizer: Visualization of pseudoknots on three-dimensional RNA structuresTakumi Otagaki, Goro Terai, Kiyoshi Asai, Junichi Iwakiri. ploscb, 21(11):1013693, 2025. [doi]

Deep generative model of RNAs based on variational autoencoder with context-free grammarGoro Terai, Kiyoshi Asai. bioinformatics, 41(8), 2025. [doi]

2020

Finding the direct optimal RNA barrier energy and improving pathways with an arbitrary energy modelHiroki Takizawa, Junichi Iwakiri, Goro Terai, Kiyoshi Asai. bioinformatics, 36(Supplement-1), 2020. [doi]

2017

Evolutionary design of multiple genes encoding the same proteinGoro Terai, Satoshi Kamegai, Akito Taneda, Kiyoshi Asai. bioinformatics, 33(11):1613-1620, 2017. [doi]

2016

CDSfold: an algorithm for designing a protein-coding sequence with the most stable secondary structureGoro Terai, Satoshi Kamegai, Kiyoshi Asai. bioinformatics, 32(6):828-834, 2016. [doi]

Comprehensive prediction of lncRNA-RNA interactions in human transcriptomeGoro Terai, Junichi Iwakiri, Tomoshi Kameda, Michiaki Hamada, Kiyoshi Asai. bmcgenomics, 17(S-1):12, 2016. [doi]

2015

Ustilaginoidea virensTakahiro Tsukui, Nozomi Nagano, Myco Umemura, Toshitaka Kumagai, Goro Terai, Masayuki Machida, Kiyoshi Asai. bioinformatics, 31(7):981-985, 2015. [doi]

2011

A detailed investigation of accessibilities around target sites of siRNAs and miRNAsHisanori Kiryu, Goro Terai, Osamu Imamura, Hiroyuki Yoneyama, Kenji Suzuki, Kiyoshi Asai. bioinformatics, 27(13):1788-1797, 2011. [doi]

2009

The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAsToutai Mituyama, Kouichirou Yamada, Emi Hattori, Hiroaki Okida, Yukiteru Ono, Goro Terai, Aya Yoshizawa, Takashi Komori, Kiyoshi Asai. nar, 37(Database-Issue):89-92, 2009. [doi]

2008

Software.ncrna.org: web servers for analyses of RNA sequencesKiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama. nar, 36(Web-Server-Issue):75-78, 2008. [doi]

2007

fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequencesTaishin Kin, Kouichirou Yamada, Goro Terai, Hiroaki Okida, Yasuhiko Yoshinari, Yukiteru Ono, Aya Kojima, Yuki Kimura, Takashi Komori, Kiyoshi Asai. nar, 35(Database-Issue):145-148, 2007. [doi]

2004

Predicting rules on organization of cis-regulatory elements, taking the order of elements into accountGoro Terai, Toshihisa Takagi. bioinformatics, 20(7):1119-1128, 2004. [doi]

2001

DBTBS: a database of Bacillus subtilis promoters and transcription factorsTakahiro Ishii, Ken-ichi Yoshida, Goro Terai, Yasutaro Fujita, Kenta Nakai. nar, 29(1):278-280, 2001.

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