Hugues Richard - researchr alias

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Viewing Publication 1 - 14 from 14

2022

2020

Targeted domain assembly for fast functional profiling of metagenomic datasets with S3ALaurent David, Riccardo Vicedomini, Hugues Richard, Alessandra Carbone. bioinformatics, 36(13):3975-3981, 2020. [doi]

2018

Meet-U: Educating through research immersionNika Abdollahi, Alexandre Albani, Eric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, Romain Conte, Laurent David, Agathe Delaune, Samia Djerroud, Pauline Fourgoux, Nadège Guiglielmoni, Jeanne Laurentie, Nathalie Lehmann, Camille Lochard, Rémi Montagne, Vasiliki Myrodia, Vaitea Opuu, Elise Parey, Lélia Polit, Sylvain Privé, Chloé Quignot, Maria Ruiz-Cuevas, Mariam Sissoko, Nicolas Sompairac, Audrey Vallerix, Violaine Verrecchia, Marc Delarue, Raphaël Guérois, Yann Ponty, Sophie Sacquin-Mora, Alessandra Carbone, Christine Froidevaux, Stéphane Le Crom, Olivier Lespinet, Martin Weigt, Samer Abboud, Juliana S. Bernardes, Guillaume Bouvier, Chloé Dequeker, Arnaud Ferré, Patrick Fuchs, Gaëlle Lelandais, Pierre Poulain, Hugues Richard, Hugo Schweke, Elodie Laine, Anne Lopes. ploscb, 14(3), 2018. [doi]

DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing dataChadi Saad, Laurent Noé, Hugues Richard, Julie Leclerc, Marie-Pierre Buisine, Hélène Touzet, Martin Figeac. bmcbi, 19(1), 2018. [doi]

2017

DNA-Seq Error Correction Based on Substring IndicesDavid Weese, Marcel H. Schulz, Hugues Richard. In Mourad Elloumi, editor, Algorithms for Next-Generation Sequencing Data, Techniques, Approaches, and Applications. pages 147-166, Springer, 2017. [doi]

2015

Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing librariesAlexandre Gillet-Markowska, Hugues Richard, Gilles Fischer, Ingrid Lafontaine. bioinformatics, 31(6):801-808, 2015. [doi]

2014

Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space modelsBogdan Mirauta, Pierre Nicolas, Hugues Richard. bioinformatics, 30(10):1409-1416, 2014. [doi]

Fiona: a parallel and automatic strategy for read error correctionMarcel H. Schulz, David Weese, Manuel Holtgrewe, Viktoria Dimitrova, Sijia Niu, Knut Reinert, Hugues Richard. bioinformatics, 30(17):356-363, 2014. [doi]

2013

Pardiff: Inference of Differential Expression at Base-Pair Level from RNA-Seq ExperimentsBogdan Mirauta, Pierre Nicolas, Hugues Richard. iciap 2013: 418-427 [doi]

2005

seq++: analyzing biological sequences with a range of Markov-related modelsVincent Miele, Pierre-Yves Bourguignon, David Robelin, Grégory Nuel, Hugues Richard. bioinformatics, 21(11):2783-2784, 2005. [doi]

2003

SPA: simple web tool to assess statistical significance of DNA patternsHugues Richard, Grégory Nuel. nar, 31(13):3679-3681, 2003.

SIC: a tool to detect short inverted segments in a biological sequenceDavid Robelin, Hugues Richard, Bernard Prum. nar, 31(13):3669-3671, 2003.

2002

Occurrence Probability of Structured Motifs in Random SequencesStéphane Robin, Jean-Jacques Daudin, Hugues Richard, Marie-France Sagot, Sophie Schbath. jcb, 9(6):761-774, 2002.

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