Karsten Rippe - researchr alias

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Viewing Publication 1 - 16 from 16

2020

Analyses of non-coding somatic drivers in 2,658 cancer whole genomesEsther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink, Joan Frigola, Carlo Gambacorti-Passerini, Dale W. Garsed, Gad Getz, Ivo G. Gut, David Haan, Arif O. Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen, Tirso Pons, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang 0032, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch, Geoff Macintyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora. nature, 578(7793):102-111, 2020. [doi]

2019

Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approachAlexandra Poos, Theresa Kordaß, Amol Kolte, Volker Ast, Marcus Oswald, Karsten Rippe, Rainer König. bmcbi, 20(1):737, 2019. [doi]

Hyperparameter optimization for image analysis: application to prostate tissue images and live cell data of virus-infected cellsChristian Ritter, Thomas Wollmann, Patrick Bernhard, Manuel Gunkel, Delia M. Braun, Ji Young Lee, Jan Meiners, Ronald Simon, Guido Sauter, Holger Erfle, Karsten Rippe, Ralf Bartenschlager, Karl Rohr. cars, 14(11):1847-1857, 2019. [doi]

Black-Box Hyperparameter Optimization for Nuclei Segmentation in Prostate Tissue ImagesThomas Wollmann, Patrick Bernhard, Manuel Gunkel, Delia M. Braun, Jan Meiners, Ronald Simon, Guido Sauter, Holger Erfle, Karsten Rippe, Karl Rohr. bildmed 2019: 345-350 [doi]

GRUU-Net: Integrated convolutional and gated recurrent neural network for cell segmentationThomas Wollmann, Manuel Gunkel, Inn Chung, Holger Erfle, Karsten Rippe, Karl Rohr. mia, 56:68-79, 2019. [doi]

2018

2016

A spherical harmonics intensity model for 3D segmentation and 3D shape analysis of heterochromatin fociSimon Eck, Stefan Wörz, Katharina Müller-Ott, Matthias Hahn, Andreas Biesdorf, Gunnar Schotta, Karsten Rippe, Karl Rohr. mia, 32:18-31, 2016. [doi]

2014

3D shape analysis of heterochromatin foci based on a 3D spherical harmonics intensity modelSimon Eck, Stefan Wörz, Katharina Müller-Ott, Matthias Hahn, Gunnar Schotta, Karsten Rippe, Karl Rohr. miip 2014: [doi]

2013

2012

Combined Model-Based and Region-Adaptive 3D Segmentation and 3D Co-Localization Analysis of Heterochromatin FociSimon Eck, Karl Rohr, Katharina Müller-Ott, Karsten Rippe, Stefan Wörz. bildmed 2012: 9-14 [doi]

Calculating transcription factor binding maps for chromatinVladimir B. Teif, Karsten Rippe. bib, 13(2):187-201, 2012. [doi]

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Publications by 'Karsten Rippe'

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2020

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2012

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