Rainer König - researchr alias

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Viewing Publication 1 - 35 from 35

2022

Linear programming based gene expression model (LPM-GEM) predicts the carbon source for Bacillus subtilisKulwadee Thanamit, Franziska Hörhold, Marcus Oswald, Rainer König. bmcbi, 23(1):226, 2022. [doi]

2021

Evaluating the effects of automation components in service networks of rail freightTobias Pollehn, Moritz Ruf, Rainer König. jrtpm, 20:100267, 2021. [doi]

2020

Reprogramming of macrophages employing gene regulatory and metabolic network modelsFranziska Hörhold, David Eisel, Marcus Oswald, Amol Kolte, Daniela Röll, Wolfram Osen, Stefan B. Eichmüller, Rainer König. ploscb, 16(2), 2020. [doi]

2019

Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approachAlexandra Poos, Theresa Kordaß, Amol Kolte, Volker Ast, Marcus Oswald, Karsten Rippe, Rainer König. bmcbi, 20(1):737, 2019. [doi]

2017

Segmentation of cell structures using Model-Based Set Covering with iterative reweightingPeter Markowsky, Svenja Reith, Tabea E. Zuber, Rainer König, Karl Rohr, Christoph Schnörr. isbi 2017: 392-396 [doi]

2016

The Use of Tools, Modelling Methods, Data Types, and Endpoints in Systems Medicine: A Survey on Projects of the German e: Med-ProgrammeMatthias Gietzelt, Thomas Höfer, Petra Knaup-Gregori, Rainer König, Martin Löpprich, Alexandra Poos, Matthias Ganzinger. mie 2016: 670-674 [doi]

2014

Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signalingRosario M. Piro, Stefan Wiesberg, Gunnar Schramm, Nico Rebel, Marcus Oswald, Roland Eils, Gerhard Reinelt, Rainer König. bmcsb, 8:56, 2014. [doi]

Estimating the activity of transcription factors by the effect on their target genesTheresa Schacht, Marcus Oswald, Roland Eils, Stefan B. Eichmüller, Rainer König. bioinformatics, 30(17):401-407, 2014. [doi]

2013

SplicingCompass: differential splicing detection using RNA-Seq dataMoritz Aschoff, Agnes Hotz-Wagenblatt, Karl-Heinz Glatting, Matthias Fischer, Roland Eils, Rainer König. bioinformatics, 29(9):1141-1148, 2013. [doi]

Disease-gene discovery by integration of 3D gene expression and transcription factor binding affinitiesRosario M. Piro, Ivan Molineris, Ferdinando Di Cunto, Roland Eils, Rainer König. bioinformatics, 29(4):468-475, 2013. [doi]

2012

Cell Tracking for Automatic Migration and Proliferation Analysis in High-Throughput ScreensNathalie Harder, Richa Batra, Sina Gogolin, Nicolle Diessl, Roland Eils, Frank Westermann, Rainer König, Karl Rohr. bildmed 2012: 243-248 [doi]

2011

RIP: the regulatory interaction predictor - a machine learning-based approach for predicting target genes of transcription factorsTobias Bauer, Roland Eils, Rainer König. bioinformatics, 27(16):2239-2247, 2011. [doi]

2010

Identifying essential genes in bacterial metabolic networks with machine learning methodsKitiporn Plaimas, Roland Eils, Rainer König. bmcsb, 4:56, 2010. [doi]

Regulation patterns in signaling networks of cancerGunnar Schramm, Nandakumar Kannabiran, Rainer König. bmcsb, 4:162, 2010. [doi]

PathWave: discovering patterns of differentially regulated enzymes in metabolic pathwaysGunnar Schramm, Stefan Wiesberg, Nicolle Diessl, Anna-Lena Kranz, Vitalia Sagulenko, Marcus Oswald, Gerhard Reinelt, Frank Westermann, Roland Eils, Rainer König. bioinformatics, 26(9):1225-1231, 2010. [doi]

Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening imagesApichat Suratanee, Ilka Rebhan, Petr Matula, Anil Kumar, Lars Kaderali, Karl Rohr, Ralf Bartenschlager, Roland Eils, Rainer König. bioinformatics, 26(18), 2010. [doi]

2009

Haralick's Texture Features Computation Accelerated by GPUs for Biological ApplicationsMarkus Gipp, Guillermo Marcus Martinez, Nathalie Harder, Apichat Suratanee, Karl Rohr, Rainer König, Reinhard Männer. hpsc 2012: 127-137 [doi]

Analyzing the regulation of metabolic pathways in human breast cancerEva-Maria Surmann, Gunnar Schramm, Stefan Wiesberg, Marcus Oswald, Gerhard Reinelt, Roland Eils, Rainer König. lwa 2009:

2008

Machine learning based analyses on metabolic networks supports high-throughput knockout screensKitiporn Plaimas, Jan-Phillip Mallm, Marcus Oswald, Fabian Svara, Victor Sourjik, Roland Eils, Rainer König. bmcsb, 2:67, 2008. [doi]

2007

Integrating Genomic and Transcriptomic Data into Graph Based Approaches for Defining Essential Reactions in the Metabolic Network of Escherichia ColiKitiporn Plaimas, Marcus Oswald, Roland Eils, Rainer König. lwa 2007: 55-60

Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of ::::Escherichia coli::::Gunnar Schramm, Marc Zapatka, Roland Eils, Rainer König. bmcbi, 8, 2007. [doi]

2006

2004

Gene expression analysis on biochemical networks using the Potts spin modelRainer König, Roland Eils. bioinformatics, 20(10):1500-1505, 2004. [doi]

Applying Support Vector Machines for Gene ontology based gene function predictionArunachalam Vinayagam, Rainer König, Jutta Moormann, Falk Schubert, Roland Eils, Karl-Heinz Glatting, Sándor Suhai. bmcbi, 5:116, 2004. [doi]

2003

Gene expression analysis on biochemical networks with the potts spin modelRainer König, Roland Eils. gcb 2003: 69-72

2002

Modelling of Information Flows in CellsMarco Weismueller, Rainer König, Roland Eils. scesm 2002: 413-417

1999

Media Oriented Systems Transport (MOST®) - Standard für Multimedia Networking im Fahrzeug / Media Oriented Systems Transport - Standard for Multimedia Networking in Vehicle EnvironmentRainer König, Christian Thiel. it, 41(5):36-43, 1999. [doi]

1993

A Prototype of an Interface Bilder for the Common Lisp Interface Manager - CLIBJan Hesse, Rainer König, Filippo Logi, Jens Herder. SIGPLAN, 28(8):19-28, 1993.

1992

Informationstechnik für den Verkehr - Medizin oder Droge?Dirk-Michael Harmsen, Rainer König. gesellschaft 1992: 156-160

1991

Möglichkeiten und Grenzen von "Cooperative Work"Rainer König, Peter Zoche. gi 1991: 293-302

1990

Chancen des Einsatzes öffentlicher Datennetze bei der umweltverträglichen Steuerung des PersonennahverkehrsPeter Zoche, Rainer König. umwelt 1991: 789-798

1980

Petri-Netze und ihre Verwendung zum standardisierten Entwurf digitaler SteuerungenRainer König. PhD thesis, Dresden University of Technology, Germany, 1980. [doi]

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