Natalia Ivanova - researchr alias

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Viewing Publication 1 - 25 from 25

2024

Inferring Metabolic States from Single Cell Transcriptomic Data via Geometric Deep LearningHolly R. Steach, Siddharth Viswanath, Yixuan He, Xitong Zhang, Natalia Ivanova, Matthew J. Hirn, Michael Perlmutter, Smita Krishnaswamy. recomb 2024: 235-252 [doi]

2023

2021

VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein familiesJoan Carles Pons, David Páez-Espino, Gabriel Riera, Natalia Ivanova, Nikos Kyrpides, Mercè Llabrés. bioinformatics, 37(13):1805-1813, 2021. [doi]

2020

Kinetic calculation: Software tool for determining the kinetic parameters of the thermal decomposition process using the Vyazovkin MethodDmitry Drozin, Sergey Sozykin, Natalia Ivanova, Tatiana Olenchikova, Tatyana Krupnova, Natalia Krupina, Viacheslav Avdin. softx, 11:100359, 2020. [doi]

Modelling of flexible manufacturing systemsSergey Egorov, Alexey Kapitanov, Vladimir Mitrofanov, Leonid Shvartsburg, Natalia Ivanova, Sergey Ryabov. ijmtm, 34(3):245-258, 2020. [doi]

2017

IMG/M: integrated genome and metagenome comparative data analysis systemI-Min A. Chen, Victor M. Markowitz, Ken Chu, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Evan Andersen, Marcel Huntemann, Neha Varghese, Michalis Hadjithomas, Kristin Tennessen, Torben-Nielsen, Natalia Ivanova, Nikos Kyrpides. nar, 45(Database-Issue), 2017. [doi]

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomesMichalis Hadjithomas, I-Min A. Chen, Ken Chu, Jinghua Huang, Anna Ratner, Krishna Palaniappan, Evan Andersen, Victor M. Markowitz, Nikos Kyrpides, Natalia Ivanova. nar, 45(Database-Issue), 2017. [doi]

2014

Response of passive microwave sea ice concentration algorithms to thin iceGeorg Heygster, Marcus Huntemann, Natalia Ivanova, Roberto Saldo, Leif Toudal Pedersen. igarss 2014: 3618-3621 [doi]

Retrieval of Arctic Sea Ice Parameters by Satellite Passive Microwave Sensors: A Comparison of Eleven Sea Ice Concentration AlgorithmsNatalia Ivanova, Ola M. Johannessen, Leif Toudal Pedersen, Rasmus T. Tonboe. tgrs, 52(11):7233-7246, 2014. [doi]

2012

2010

2009

IMG ER: a system for microbial genome annotation expert review and curationVictor M. Markowitz, Konstantinos Mavrommatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos Kyrpides. bioinformatics, 25(17):2271-2278, 2009. [doi]

2008

Annotation of metagenome short reads using proxygenesDaniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz. eccb 2008: 7-13 [doi]

IMG/M: a data management and analysis system for metagenomesVictor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides. nar, 36(Database-Issue):534-538, 2008. [doi]

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensionsVictor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides. nar, 36(Database-Issue):528-533, 2008. [doi]

2006

2005

The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data ManagementVictor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Natalia Ivanova, Nikos Kyrpides. VLDB 2005: 1067-1078 [doi]

2003

1997

The metabolic pathway collection: an updateEvgeni Selkov, Miliusha Galimova, Igor Goryanin, Yuri Grechkin, Natalia Ivanova, Yuri Komarov, Natalia Maltsev, Natalia Mikhailova, Valeri Nenashev, Ross A. Overbeek, Elena Panyushkina, Lyudmila Pronevitch, Evgeni Selkov Jr.. nar, 25(1):37-38, 1997.

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