Abstract is missing.
- EditorialAnna Tramontano. 1 [doi]
- ECCB 2008 Organization3-5 [doi]
- Annotation of metagenome short reads using proxygenesDaniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz. 7-13 [doi]
- PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein databaseChia-Ying Yang, Chao-Hui Chang, Ya-Ling Yu, Tsu-Chun Emma Lin, Sheng-An Lee, Chueh-Chuan Yen, Jinn-Moon Yang, Jin-mei Lai, Yi-Ren Hong, Tzu-Ling Tseng, Kun-Mao Chao, Chi-Ying F. Huang. 14-20 [doi]
- Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathwaysA. M. Willemsen, G. A. Jansen, J. C. Komen, S. van Hooff, H. R. Waterham, P. M. T. Brites, Ronald J. A. Wanders, Antoine H. C. van Kampen. 21-27 [doi]
- Functional coherence in domain interaction networksJayesh Pandey, Mehmet Koyutürk, Shankar Subramaniam, Ananth Grama. 28-34 [doi]
- An integrative approach for predicting interactions of protein regionsSven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht. 35-41 [doi]
- Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometryLukas Käll, John D. Storey, William Stafford Noble. 42-48 [doi]
- Towards ::::de novo:::: identification of metabolites by analyzing tandem mass spectraSebastian Böcker, Florian Rasche. 49-55 [doi]
- An environmental perspective on large-scale genome clustering based on metabolic capabilitiesGabi Kastenmüller, Johann Gasteiger, Hans-Werner Mewes. 56-62 [doi]
- Fusing time series expression data through hybrid aggregation and hierarchical mergeElena Tsiporkova, Veselka Boeva. 63-69 [doi]
- Gaussian process modelling of latent chemical species: applications to inferring transcription factor activitiesPei Gao, Antti Honkela, Magnus Rattray, Neil D. Lawrence. 70-75 [doi]
- SIRENE: supervised inference of regulatory networksFantine Mordelet, Jean-Philippe Vert. 76-82 [doi]
- PhyloDetect: a likelihood-based strategy for detecting microorganisms with diagnostic microarraysHubert Rehrauer, Susan Schönmann, Leo Eberl, Ralph Schlapbach. 83-89 [doi]
- Clinically driven semi-supervised class discovery in gene expression dataIsrael Steinfeld, Roy Navon, Diego Ardigò, Ivana Zavaroni, Zohar Yakhini. 90-97 [doi]
- Protein structure alignment considering phenotypic plasticityGergely Csaba, Fabian Birzele, Ralf Zimmer. 98-104 [doi]
- Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sitesRafael Najmanovich, Natalja Kurbatova, Janet M. Thornton. 105-111 [doi]
- RNA structure alignment by a unit-vector approachEmidio Capriotti, Marc A. Martí-Renom. 112-118 [doi]
- Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text miningShi Yu, Steven Van Vooren, Léon-Charles Tranchevent, Bart De Moor, Yves Moreau. 119-125 [doi]
- Inter-species normalization of gene mentions with GNATJörg Hakenberg, Conrad Plake, Robert Leaman, Michael Schroeder, Graciela Gonzalez. 126-132 [doi]
- Analysis of segmental duplications via duplication distanceCrystal L. Kahn, Benjamin J. Raphael. 133-138 [doi]
- A fast and flexible method for the segmentation of aCGH dataErez Ben-Yaacov, Yonina C. Eldar. 139-145 [doi]
- Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned casesAndrew Wei Xu, Benoît Alain, David Sankoff. 146-152 [doi]
- HapCUT: an efficient and accurate algorithm for the haplotype assembly problemVikas Bansal, Vineet Bafna. 153-159 [doi]
- Efficient representation and ::::P::::-value computation for high-order Markov motifsPaulo G. S. da Fonseca, Katia S. Guimarães, Marie-France Sagot. 160-166 [doi]
- Mining significant tree patterns in carbohydrate sugar chainsKosuke Hashimoto, Ichigaku Takigawa, Motoki Shiga, Minoru Kanehisa, Hiroshi Mamitsuka. 167-173 [doi]
- Optimal spliced alignments of short sequence readsFabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Rätsch. 174-180 [doi]
- ChIPmix: mixture model of regressions for two-color ChIP-chip analysisMarie-Laure Martin-Magniette, Tristan Mary-Huard, Caroline Bérard, Stéphane Robin. 181-186 [doi]
- Segment-based multiple sequence alignmentTobias Rausch, Anne-Katrin Emde, David Weese, Andreas Döring, Cédric Notredame, Knut Reinert. 187-192 [doi]
- Connect the dots: exposing hidden protein family connections from the entire sequence treeYaniv Loewenstein, Michal Linial. 193-199 [doi]
- Improved network-based identification of protein orthologsNir Yosef, Roded Sharan, William Stafford Noble. 200-206 [doi]
- Comprehensive ::::in silico:::: mutagenesis highlights functionally important residues in proteinsYana Bromberg, Burkhard Rost. 207-212 [doi]
- Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modulesJulio Saez-Rodriguez, Stefan Gayer, Martin Ginkel, Ernst Dieter Gilles. 213-219 [doi]
- From minimal signed circuits to the dynamics of Boolean regulatory networksElisabeth Remy, Paul Ruet. 220-226 [doi]
- Temporal logic patterns for querying dynamic models of cellular interaction networksPedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong. 227-233 [doi]
- Logical modelling of the role of the Hh pathway in the patterning of the ::::Drosophila:::: wing discAitor Gonzalez, Claudine Chaouiya, Denis Thieffry. 234-240 [doi]
- Gain and loss of phosphorylation sites in human cancerPredrag Radivojac, Peter H. Baenziger, Maricel G. Kann, Matthew E. Mort, Matthew W. Hahn, Sean D. Mooney. 241-247 [doi]
- Logical analysis of survival data: prognostic survival models by detecting high-degree interactions in right-censored dataLouis-Philippe Kronek, Anupama Reddy. 248-253 [doi]