Nathan Salomonis - researchr alias

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Viewing Publication 1 - 18 from 18

2023

pyInfinityFlow: optimized imputation and analysis of high-dimensional flow cytometry data for millions of cellsKyle Ferchen, Nathan Salomonis, H. Leighton Grimes. bioinformatics, 39(5), May 2023. [doi]

2022

CellDrift: inferring perturbation responses in temporally sampled single-cell dataKang Jin, Daniel J. Schnell, Guangyuan Li, Nathan Salomonis, V. B. Surya Prasath, Rhonda Szczesniak, Bruce J. Aronow. bib, 23(5), 2022. [doi]

2021

DeepImmuno: deep learning-empowered prediction and generation of immunogenic peptides for T-cell immunityGuangyuan Li, Balaji Iyer, V. B. Surya Prasath, Yizhao Ni, Nathan Salomonis. bib, 22(6), 2021. [doi]

Pseudocell Tracer - A method for inferring dynamic trajectories using scRNAseq and its application to B cells undergoing immunoglobulin class switch recombinationDerek Reiman, Godhev Kumar Manakkat Vijay, Heping Xu, Andrew Sonin, Dianyu Chen, Nathan Salomonis, Harinder Singh, Aly A. Khan. ploscb, 17(5), 2021. [doi]

2020

Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMFMeenakshi Venkatasubramanian, Kashish Chetal, Daniel J. Schnell, Gowtham Atluri, Nathan Salomonis. bioinformatics, 36(12):3773-3780, 2020. [doi]

2016

Single-cell analysis of mixed-lineage states leading to a binary cell fate choiceAndre Olsson, Meenakshi Venkatasubramanian, Viren K. Chaudhri, Bruce J. Aronow, Nathan Salomonis, Harinder Singh, H. Leighton Grimes. nature, 537(7622):698-702, 2016. [doi]

2014

2013

Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic dataInna Dubchak, Matthew Munoz, Alexander Poliakov, Nathan Salomonis, Simon Minovitsky, Rolf Bodmer, Alexander C. Zambon. bioinformatics, 29(16):2059-2061, 2013. [doi]

2012

MAAMD: A Workflow to Standardize Meta-Analyses of Affymetrix Microarray DataZhuohui Gan, Jianwu Wang, Nathan Salomonis, Ilkay Altintas, Andrew D. McCulloch, Alexander C. Zambon. hisb 2012: 120 [doi]

LineageProfiler: Automated Classification and Visualization of Cell Type Identity for Mammalian TranscriptomesNathan Salomonis. hisb 2012: 114 [doi]

AltAnalyze - An Optimized Platform for RNA-Seq Splicing and Domain-Level AnalysesNathan Salomonis. hisb 2012: 113 [doi]

GO-Elite: a flexible solution for pathway and ontology over-representationAlexander C. Zambon, Stan Gaj, Isaac Ho, Kristina Hanspers, Karen Vranizan, Chris T. A. Evelo, Bruce R. Conklin, Alexander R. Pico, Nathan Salomonis. bioinformatics, 28(16):2209-2210, 2012. [doi]

Mosaic: making biological sense of complex networksChao Zhang, Kristina Hanspers, Allan Kuchinsky, Nathan Salomonis, Dong Xu, Alexander R. Pico. bioinformatics, 28(14):1943-1944, 2012. [doi]

2010

AltAnalyze and DomainGraph: analyzing and visualizing exon expression dataDorothea Emig, Nathan Salomonis, Jan Baumbach, Thomas Lengauer, Bruce R. Conklin, Mario Albrecht. nar, 38(Web-Server-Issue):755-762, 2010. [doi]

2009

Alternative Splicing in the Differentiation of Human Embryonic Stem Cells into Cardiac PrecursorsNathan Salomonis, Brandon Nelson, Karen Vranizan, Alexander R. Pico, Kristina Hanspers, Allan Kuchinsky, Linda Ta, Mark Mercola, Bruce R. Conklin. ploscb, 5(11), 2009. [doi]

2007

GenMAPP 2: new features and resources for pathway analysisNathan Salomonis, Kristina Hanspers, Alexander C. Zambon, Karen Vranizan, Steven C. Lawlor, Kam D. Dahlquist, Scott Doniger, Josh Stuart, Bruce R. Conklin, Alexander R. Pico. bmcbi, 8, 2007. [doi]

2005

ANOSVA: a statistical method for detecting splice variation from expression dataMelissa S. Cline, John Blume, Simon Cawley, Tyson Clark, Jing-Shan Hu, Gang Lu, Nathan Salomonis, Hui Wang, Alan Williams. ismb 2005: 107-115 [doi]

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