Ozgur E. Akman - researchr alias

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Viewing Publication 1 - 22 from 22

2023

BDEtools: A MATLAB Package for Boolean Delay Equation ModelingOzgur E. Akman, Kevin Doherty, Benjamin J. Wareham. jcb, 30(1):52-69, 2023. [doi]

Global nonlinear approach for mapping parameters of neural mass modelsDominic M. Dunstan, Mark P. Richardson, Eugenio Abela, Ozgur E. Akman, Marc Goodfellow. ploscb, 19(3), March 2023. [doi]

2021

Reduced Models of Gene Regulatory Networks: Visualising Multi-modal LandscapesKhulood AlYahya, Kevin A. J. Doherty, Ozgur E. Akman, Jonathan E. Fieldsend. In Mike Preuss, Michael G. Epitropakis, Xiaodong Li 0001, Jonathan E. Fieldsend, editors, Metaheuristics for Finding Multiple Solutions. Natural Computing Series, pages 229-258, Springer, 2021. [doi]

Towards population-based fitness landscape analysis using local optima networksMelike D. Karatas, Ozgur E. Akman, Jonathan E. Fieldsend. gecco 2021: 1674-1682 [doi]

2020

SODECL: An Open-Source Library for Calculating Multiple Orbits of a System of Stochastic Differential Equations in ParallelEleftherios Avramidis, Marta Lalik, Ozgur E. Akman. TOMS, 46(3), 2020. [doi]

Slow-fast control of eye movements: an instance of Zeeman's model for an actionRichard A. Clement, Ozgur E. Akman. bc, 114(4):519-532, 2020. [doi]

A simplified modelling framework facilitates more complex representations of plant circadian clocksMathias Foo, Declan G. Bates, Ozgur E. Akman. ploscb, 16(3), 2020. [doi]

2019

Landscape analysis under measurement errorKhulood AlYahya, Ozgur E. Akman, Jonathan E. Fieldsend. gecco 2019: 1415-1418 [doi]

2018

Robust multi-modal optimisationKhulood AlYahya, Kevin Anthony James Doherty, Ozgur E. Akman, Jonathan E. Fieldsend. gecco 2018: 1783-1790 [doi]

Voronoi-based archive sampling for robust optimisationKevin Anthony James Doherty, Khulood AlYahya, Jonathan E. Fieldsend, Ozgur E. Akman. gecco 2018: 249-250 [doi]

2017

On the exploitation of search history and accumulative sampling in robust optimisationKhulood AlYahya, Kevin Anthony James Doherty, Jonathan E. Fieldsend, Ozgur E. Akman. gecco 2017: 185-186 [doi]

Optimisation of an exemplar oculomotor model using multi-objective genetic algorithms executed on a GPU-CPU combinationEleftherios Avramidis, Ozgur E. Akman. bmcsb, 11(1), 2017. [doi]

Optimisation and landscape analysis of computational biology models: a case studyKevin Anthony James Doherty, Khulood AlYahya, Ozgur E. Akman, Jonathan E. Fieldsend. gecco 2017: 1644-1651 [doi]

2015

Dizzy-Beats: a Bayesian evidence analysis tool for systems biologyStuart Aitken, Alastair M. Kilpatrick, Ozgur E. Akman. bioinformatics, 31(11):1863-1865, 2015. [doi]

2014

A consensus approach to predict regulatory interactionsSuhaib Mohammed, Ozgur E. Akman, Zheng Rong Yang. bmei 2014: 769-775 [doi]

2013

2012

On the role of ultrasensitivity in biomolecular control systemsFrancesco Montefusco, Arno Steinacher, Ozgur E. Akman, Declan G. Bates, Orkun S. Soyer. cdc 2012: 3602-3607 [doi]

2010

Robustness from flexibility in the fungal circadian clockOzgur E. Akman, David A. Rand, Paul E. Brown, Andrew J. Millar. bmcsb, 4:88, 2010. [doi]

2009

Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the ::::Neurospora crassa:::: Circadian NetworkOzgur E. Akman, Federica Ciocchetta, Andrea Degasperi, Maria Luisa Guerriero. cmsb 2009: 52-67 [doi]

2006

Nonlinear time series analysis of jerk congenital nystagmusOzgur E. Akman, D. S. Broomhead, Richard A. Clement, R. V. Abadi. jcns, 21(2):153-170, 2006. [doi]

Stability of the saccadic oculomotor systemDmitry Laptev, Ozgur E. Akman, Richard A. Clement. bc, 95(3):281-287, 2006. [doi]

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