Peter G. Wolynes - researchr alias

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Viewing Publication 1 - 14 from 14

2022

A generalized Flory-Stockmayer kinetic theory of connectivity percolation and rigidity percolation of cytoskeletal networksCarlos Bueno, James Liman, Nicholas P. Schafer, Margaret S. Cheung, Peter G. Wolynes. ploscb, 18(5), 2022. [doi]

A structural dynamics model for how CPEB3 binding to SUMO2 can regulate translational control in dendritic spinesXinyu Gu, Nicholas P. Schafer, Carlos Bueno, Wei Lu, Peter G. Wolynes. ploscb, 18(11):1010657, November 2022. [doi]

2021

The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genomeVinícius G. Contessoto, Ryan R. Cheng, Arya Hajitaheri, Esteban Dodero-Rojas, Matheus F. Mello, Erez Lieberman Aiden, Peter G. Wolynes, Michele Di Pierro, José N. Onuchic. nar, 49(Database-Issue), 2021. [doi]

OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulationsWei Lu, Carlos Bueno, Nicholas P. Schafer, Joshua Moller, Shikai Jin, Xun Chen, Mingchen Chen, Xinyu Gu, Aram Davtyan, Juan J. de Pablo, Peter G. Wolynes. ploscb, 17(2), 2021. [doi]

FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulationsAtilio O. Rausch, Maria I Freiberger, Cesar O. Leonetti, Diego M. Luna, Leandro G. Radusky, Peter G. Wolynes, Diego U. Ferreiro, R. Gonzalo Parra. bioinformatics, 37(18):3038-3040, 2021. [doi]

2020

AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapesShikai Jin, Vinícius G. Contessoto, Mingchen Chen, Nicholas P. Schafer, Wei Lu, Xun Chen, Carlos Bueno, Arya Hajitaheri, Brian J. Sirovetz, Aram Davtyan, Garegin A. Papoian, Min-Yeh Tsai, Peter G. Wolynes. nar, 48(Webserver-Issue), 2020. [doi]

2016

Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostaticsR. Gonzalo Parra, Nicholas P. Schafer, Leandro G. Radusky, Min-Yeh Tsai, A. Brenda Guzovsky, Peter G. Wolynes, Diego U. Ferreiro. nar, 44(Webserver-Issue), 2016. [doi]

2012

Protein frustratometer: a tool to localize energetic frustration in protein moleculesMichael Jenik, R. Gonzalo Parra, Leandro G. Radusky, Adrian Gustavo Turjanski, Peter G. Wolynes, Diego U. Ferreiro. nar, 40(Web-Server-Issue):348-351, 2012. [doi]

2010

The Energy Landscape, Folding Pathways and the Kinetics of a Knotted ProteinMichael C. Prentiss, David J. Wales, Peter G. Wolynes. ploscb, 6(7), 2010. [doi]

2008

The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional ArchitecturesDiego U. Ferreiro, Aleksandra M. Walczak, Elizabeth A. Komives, Peter G. Wolynes. ploscb, 4(5), 2008. [doi]

2002

Folding funnels: The key to robust protein structure predictionCorey Hardin, Michael P. Eastwood, Michael Prentiss, Zaida Luthey-Schulten, Peter G. Wolynes. jcc, 23(1):138-146, 2002. [doi]

2001

Evaluating protein structure-prediction schemes using energy landscape theoryMichael P. Eastwood, Corey Hardin, Zaida Luthey-Schulten, Peter G. Wolynes. ibmrd, 45(3):475-498, 2001. [doi]

1994

A Bayesian Approach to Sequence Alignment Algorithms for Protein Structure RecognitionRichard A. Goldstein, Zaida Luthey-Schulten, Peter G. Wolynes. hicss 1994: 306-315

1992

Classification and Prediction of Protein Side-Chains by Neural Network TechniquesJ. Irwin, Henrik G. Bohr, K. Mochizuki, Peter G. Wolynes. IJNS, 3(Supplement):177-182, 1992. [doi]

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