Sascha Ott - researchr alias

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Viewing Publication 1 - 15 from 15

2025

Integrative systems biology approaches for analyzing microbiome dysbiosis and species interactionsSyed Sabih Ur Rehman, Muhammad Ibtisam Nasar, Cristina S. Mesquita, Souhaila Al Khodor, Richard A. Notebaart, Sascha Ott, Sunil Mundra, Ramesh P. Arasardanam, Khalid Muhammad, Mohammad Tauqeer Alam. bib, 26(4), 2025. [doi]

2024

TimeTeller: A tool to probe the circadian clock as a multigene dynamical systemDenise Vlachou, Maria Veretennikova, Laura Usselmann, Vadim Vasilyev, Sascha Ott, Georg A. Bjarnason, Robert Dallmann, Francis Levi, David A. Rand. ploscb, 20(2), February 2024. [doi]

2018

Bringing numerous methods for expression and promoter analysis to a public cloud computing serviceKrzysztof Polanski, Bo Gao, Sam A. Mason, Paul Brown, Sascha Ott, Katherine J. Denby, David L. Wild. bioinformatics, 34(5):884-886, 2018. [doi]

2014

Wigwams: identifying gene modules co-regulated across multiple biological conditionsKrzysztof Polanski, Johanna Rhodes, Claire Hill, Peijun Zhang, Dafyd J. Jenkins, Steven J. Kiddle, Aleksey Jironkin, Jim Beynon, Vicky Buchanan-Wollaston, Sascha Ott, Katherine J. Denby. bioinformatics, 30(7):962-970, 2014. [doi]

2013

MEME-LaB: motif analysis in clustersPaul Brown, Laura Baxter, Richard Hickman, Jim Beynon, Jonathan D. Moore, Sascha Ott. bioinformatics, 29(13):1696-1697, 2013. [doi]

2010

An alignment-free model for comparison of regulatory sequencesHashem Koohy, Nigel P. Dyer, John E. Reid, Georgy Koentges, Sascha Ott. bioinformatics, 26(19):2391-2397, 2010. [doi]

2009

Transcriptional programs: Modelling higher order structure in transcriptional controlJohn E. Reid, Sascha Ott, Lorenz Wernisch. bmcbi, 10, 2009. [doi]

2007

On the complexity of deriving position specific score matrices from positive and negative sequencesTatsuya Akutsu, Hideo Bannai, Satoru Miyano, Sascha Ott. DAM, 155(6-7):676-685, 2007. [doi]

A comparative study of S/MAR prediction toolsKenneth Evans, Sascha Ott, Annika Hansen, Georgy Koentges, Lorenz Wernisch. bmcbi, 8, 2007. [doi]

2005

Superiority of network motifs over optimal networks and an application to the revelation of gene network evolutionSascha Ott, Annika Hansen, SunYong Kim, Satoru Miyano. bioinformatics, 21(2):227-238, 2005. [doi]

2004

Finding Optimal Models for Small Gene NetworksSascha Ott, Seiya Imoto, Satoru Miyano. psb 2004: 557-567 [doi]

2003

Intrasplicing - Analysis of Long Intron SequencesSascha Ott, Yoshinori Tamada, Hideo Bannai, Kenta Nakai, Satoru Miyano. psb 2003: 339-350 [doi]

2002

On the Complexity of Deriving Position Specific Score Matrices from ExamplesTatsuya Akutsu, Hideo Bannai, Satoru Miyano, Sascha Ott. cpm 2002: 168-177 [doi]

Inferring a Union of Halfspaces from ExamplesTatsuya Akutsu, Sascha Ott. cocoon 2002: 117-126 [doi]

1999

Lower Bounds for Approximating Shortest Superstrings over an Alphabet of Size 2Sascha Ott. criwg 1999: 55-64 [doi]

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