Thomas E. Ferrin - researchr alias

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Viewing Publication 1 - 30 from 30

2017

An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of ProteinsAngela F. Harper, Janelle B. Leuthaeuser, Patricia C. Babbitt, John H. Morris, Thomas E. Ferrin, Leslie B. Poole, Jacquelyn S. Fetrow. ploscb, 13(2), 2017. [doi]

Biocuration in the structure-function linkage database: the anatomy of a superfamilyGemma L. Holliday, Shoshana D. Brown, Eyal Akiva, David Mischel, Michael A. Hicks, John H. Morris, Conrad C. Huang, Elaine C. Meng, Scott C.-H. Pegg, Thomas E. Ferrin, Patricia C. Babbitt. biodb, 2017, 2017. [doi]

2016

DASP3: identification of protein sequences belonging to functionally relevant groupsJanelle B. Leuthaeuser, John H. Morris, Angela F. Harper, Thomas E. Ferrin, Patricia C. Babbitt, Jacquelyn S. Fetrow. bmcbi, 17, 2016. [doi]

2015

2014

Enhancing UCSF Chimera through web servicesConrad C. Huang, Elaine C. Meng, John H. Morris, Eric F. Pettersen, Thomas E. Ferrin. nar, 42(Webserver-Issue):478-484, 2014. [doi]

setsApp: Set operations for Cytoscape Nodes and EdgesJohn H. Morris, Allan Wu, Nadezhda T. Doncheva, Mario Albrecht, Thomas E. Ferrin. f1000research, 3:149, 2014. [doi]

enhancedGraphics: a Cytoscape app for enhanced node graphicsJohn H. Morris, Allan Kuchinsky, Thomas E. Ferrin, Alexander R. Pico. f1000research, 3:147, 2014. [doi]

2011

Improving the quality of protein similarity network clustering algorithms using the network edge weight distributionLeonard Apeltsin, John H. Morris, Patricia C. Babbitt, Thomas E. Ferrin. bioinformatics, 27(3):326-333, 2011. [doi]

clusterMaker: a multi-algorithm clustering plugin for CytoscapeJohn H. Morris, Leonard Apeltsin, Aaron M. Newman, Jan Baumbach, Tobias Wittkop, Gang Su, Gary D. Bader, Thomas E. Ferrin. bmcbi, 12:436, 2011. [doi]

2007

structureViz: linking Cytoscape and UCSF ChimeraJohn H. Morris, Conrad C. Huang, Patricia C. Babbitt, Thomas E. Ferrin. bioinformatics, 23(17):2345-2347, 2007. [doi]

2006

2005

Enhancing Data Sharing in Collaborative Research Projects with DASHThomas E. Ferrin, Conrad C. Huang, Daniel M. Greenblatt, Doug Stryke, Kathleen M. Giacomini, John H. Morris. psb 2005: [doi]

Representing Structure-Function Relationships in Mechanistically Diverse Enzyme SuperfamiliesScott C.-H. Pegg, Shoshana Brown, Sunil Ojha, Conrad C. Huang, Thomas E. Ferrin, Patricia C. Babbitt. psb 2005: [doi]

2004

2003

The Structure Superposition DatabaseRanyee A. Chiang, Elaine C. Meng, Conrad C. Huang, Thomas E. Ferrin, Patricia C. Babbitt. nar, 31(1):505-510, 2003.

MINRMS: an efficient algorithm for determining protein structure similarity using root-mean-squared-distanceAndrew I. Jewett, Conrad C. Huang, Thomas E. Ferrin. bioinformatics, 19(5):625-634, 2003.

BayGenomics: a resource of insertional mutations in mouse embryonic stem cellsDoug Stryke, Michiko Kawamoto, Conrad C. Huang, Susan J. Johns, Leslie A. King, Courtney A. Harper, Elaine C. Meng, Roy E. Lee, Alice Yee, Larry L Italien, Pao-Tien Chuang, Stephen G. Young, William C. Skarnes, Patricia C. Babbitt, Thomas E. Ferrin. nar, 31(1):278-281, 2003.

SNP Analysis and Presentation in the Pharmacogenetics of Membrane Transporters ProjectDoug Stryke, Conrad C. Huang, Michiko Kawamoto, Susan J. Johns, Elaine J. Carlson, Joseph A. Deyoung, Maya K. Leabman, Ira Herskowitz, Kathleen M. Giacomini, Thomas E. Ferrin. psb 2003: 535-547 [doi]

2001

High Performance Computing for Computational Biology - Session IntroductionThomas E. Ferrin, Bruce A. Foster, Richard Hughey. psb 2001: 238-239 [doi]

Chimera: Affordable Desktop Molecular Modeling on Linux WorkstationsDavid E. Konerding, Conrad C. Huang, Thomas E. Ferrin. alsc 2001: [doi]

1999

Molecules to Maps: Tools for Visualization & Interaction - Session IntroductionThomas E. Ferrin, Eileen Kraemer. psb 1999: 338-340 [doi]

1998

Molecules to maps: tools for visualization and interaction in support of computational biologyEileen Kraemer, Thomas E. Ferrin. bioinformatics, 14(9):764-771, 1998.

1992

The MidasPlus molecular modeling systemThomas E. Ferrin, Conrad C. Huang, Gregory S. Couch, Eric F. Pettersen, Robert Langridge. chi 1992: 521-522 [doi]

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Publications by 'Thomas E. Ferrin'

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2017

2016

2015

2014

2011

2007

2006

2005

2004

2003

2001

1999

1998

1992

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