Abstract is missing.
- Gene Expression and Genetic Networks - Session IntroductionRoland Somogyi, Hiroaki Kitano. 3-4 [doi]
- Genetic Network Analysis in Light of Massively Parallel Biological Data AcquisitionZoltan Szallasi. 5-16 [doi]
- Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network ModelTatsuya Akutsu, Satoru Miyano, Satoru Kuhara. 17-28 [doi]
- Modeling Gene Expression with Differential EquationsTing Chen, Hongyu L. He, George M. Church. 29-40 [doi]
- Linear Modeling of mRNA Expression Levels During CNS Development and InjuryPatrik D haeseleer, X. Wen, Stefanie Fuhrman, Roland Somogyi. 41-52 [doi]
- Sensitivity of Biological Models to Errors in Parameter EstimatesRobert S. Erb, George S. Michaels. 53-64 [doi]
- Analysis of the Stabilizing Effect of ROM on the Genetic Network Controlling ColE1 Plasmid ReplicationP. J. E. Goss, Jean Peccoud. 65-76 [doi]
- Simulation of Genetic Interaction for Drosophila Leg FormationKoji Kyoda, Hiroaki Kitano. 77-89 [doi]
- Evolutionary Constraint Networks in Ligand-Binding Domains: An Information-Theoretic ApproachSylvia B. Nagl, James Freeman, Temple F. Smith. 90-101 [doi]
- NetWork: An Interactive Interface to the Tools for Analysis of Genetic Network Structure and DynamicsMaria Samsonova, V. N. Serov. 102-111 [doi]
- Modeling Regulatory Networks with Weight MatricesD. C. Weaver, Christopher T. Workman, Gary D. Stormo. 112-123 [doi]
- Data Mining and Knowledge Discovery in Molecular Databases - Session IntroductionJanice I. Glasgow, Raymond T. Ng. 124-125 [doi]
- Prediction and Visualization of Structural Switches in RNARobert Giegerich, Dirk Haase, Marc Rehmsmeier. 126-137 [doi]
- A Probabilistic Approach to a Consensus Multiple AlignmentBetty Lazareva-Ulitsky, David Haussler. 150-161 [doi]
- Clustering and Detection of 5 Splice Sites of mRNA by k Weight-Matrices ModelK. Murakami, T. Takagi. 171-181 [doi]
- Use of Bonsai Decision Trees for the Identification of Potential MHC Class I Peptide Epitope MotifsChristopher J. Savoie, Nobuhiro Kamikawaji, Takehiko Sasazuki, Satoru Kuhara. 182-189 [doi]
- Application of Knowledge Discovery to Molecular Biology: Identifying Structural Regularities in ProteinsShaobing Su, Diane J. Cook, Lawrence B. Holder. 190-201 [doi]
- Time and Memory Efficient Algorithm for Extracting Palindromic and Repetitive Subsequences in Nucleic Acid SequencesTatsuhiko Tsunoda, Masao Fukagawa, Toshihisa Takagi. 202-213 [doi]
- Effective Query Filtering for Fast Homology SearchingHugh E. Williams. 214-225 [doi]
- The Virtual CellJames C. Schaff, Leslie M. Loew. 228-239 [doi]
- Information Theoretic Approaches to Biology - Session IntroductionDavid L. Dowe, Klaus Prank. 252-253
- Location of Repetitive Regions in Sequences By Optimizing A Compression MethodOlivier Delgrange, Max Dauchet, Eric Rivals. 254-265 [doi]
- MDL and the Statistical Mechanics of Protein PotentialsT. Gregory Dewey. 266-277 [doi]
- Using Information Theory to Discover Side Chain Rotamer Classes: Analysis of the Effects of Local Backbone StructureJacquelyn S. Fetrow, George Berg. 278-289 [doi]
- Improving the Efficiency of a User-Driven Learning System with Reconfigurable Hardware. Application to DNA SplicingEric Lemoine, David Merceron, Jean Sallantin, Engelbert Mephu Nguifo. 290-301 [doi]
- Optimizing Smith-Waterman AlignmentsRolf Olsen, Terence Hwa, Michael Lässig. 302-313 [doi]
- Computing Minimum Description Length for Robust Linear Regression Model SelectionGuoqi Qian. 314-325 [doi]
- Topology Selection in Unrooted Molecular Phylogenetic Tree By Minimum Model-Based Complexity MethodHiroshi Tanaka, Fengrong Ren, Toshitsugu Okayama, Takashi Gojobori. 326-337 [doi]
- Molecules to Maps: Tools for Visualization & Interaction - Session IntroductionThomas E. Ferrin, Eileen Kraemer. 338-340 [doi]
- Proteinmorphosis: A Mechanical Model for Protein Conformational ChangesS. Meiyappan, R. Raghavan, R. Viswanathan, Y. Yu, W. Lawton. 341-353 [doi]
- ProtAlign: A 3-Dimensional Protein Alignment Assessment ToolDoanna Meads, Marc D. Hansen, Alex Pang. 354-367 [doi]
- PROMUSE: A System for Multi-Media Data Presentation of Protein Structural AlignmentsMarc D. Hansen, Erik Charp, Suresh K. Lodha, Doanna Meads, Alex Pang. 368-379 [doi]
- Developing Protein Documentaries and Other Multimedia Presentations for Molecular BiologyGreg B. Quinn, H.-P. Wang, D. Martinez, Philip E. Bourne. 380-391 [doi]
- BioJAKE: A Tool for the Creation, Visualization and Manipulation of Metabolic PathwaysWayne Salamonsen, Kevin Yee Chuen Mok, Prasanna R. Kolatkar, S. Subbiah. 392-400 [doi]
- Integrating Computation and Visualization for Biomolecular Analysis: An Example Using Python and AVSMichel F. Sanner, Bruce S. Duncan, C. J. Carrillo, Arthur J. Olson. 401-412 [doi]
- Computer-Aided Drug Design - Session IntroductionJürgen Bajorath, Teri E. Klein, Terry P. Lybrand, Jiri Novotny. 413-414 [doi]
- Field-Based Similarity Forcing in Energy Minimization and Molecular MatchingJames R. Blinn, Douglas C. Rohrer, Gerald M. Maggiora. 415-425 [doi]
- Thermodynamics and Kinetics of Ligand-Protein Binding Studied with the Weighted Histogram Analysis Method and Simulated AnnealingDjamal Bouzida, Sandra Arthurs, Anthony B. Colson, Stephan T. Freer, Daniel K. Gehlhaar, Veda Larson, Brock A. Luty, Paul A. Rejto, Peter W. Rose, Gennady Verkhivker. 426-437 [doi]
- Empirical vs. Rational Methods of Discovering New DrugsPeter Gund. 438-443 [doi]
- Binary QSAR: A New Method for the Determination of Quantitative Structure Activity RelationshipsPaul Labute. 444-455 [doi]
- Ligand-Receptor 3-D Similarity Studies Using Multiple 4-Point PharmacophoresJonathan S. Mason, Daniel L. Cheney. 456-467 [doi]
- Two-Dimensional Reaction of Biological Molecules Studied by Weighted-Ensemble Brownian DynamicsI. A. Shkel, S. Kim. 468-479 [doi]
- Protein Structure Prediction - Session IntroductionJeffrey Skolnick, Richard H. Lathrop. 480-481 [doi]
- A Combined Approach for Ab Initio Construction of Low Resolution Protein Tertiary Structures from SequenceRam Samudrala, Yu Xia 0002, M. Levitt, Enoch S. Huang. 505-516 [doi]
- Disorder in Protein Structure and Function - Session IntroductionC. Kissinger, A. Keith Dunker, Eugene I. Shakhnovich. 517-519 [doi]
- The Hydrophilic, Protease-Sensitive Terminal Domains of Eucaryotic DNA Topoisomerases Have Essential Intracellular FunctionsW.-L. Shaiu, T. Hu, T.-S. Hsieh. 578-589