Journal: Bioinformatics

Volume 19, Issue 2

169 -- 172Akhilesh Pandey, Suraj Peri, Colin Thacker, Chery A. Whipple, John J. Collins, Matthias Mann. Computational, experimental analysis reveals a novel Src family kinase in the C. elegans genome
173 -- 177Dörte Solle, David Geissler, Eckbert Stärk, Thomas Scheper, Bernd Hitzmann. Chemometric Modelling based on 2D-Fluorescence Spectra without a Calibration Measurement
178 -- 184Felix Naef, Nicholas D. Socci, Marcelo Magnasco. A study of accuracy, precision in oligonucleotide arrays: extracting more signal at large concentrations
185 -- 193Benjamin M. Bolstad, Rafael A. Irizarry, Magnus Åstrand, Terence P. Speed. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
194 -- 203Chris A. Glasbey, Peter Ghazal. Combinatorial image analysis of DNA microarray features
204 -- 211Igor Dozmorov, Michael Centola. An associative analysis of gene expression array data
212 -- 218Neil D. Clarke, Joshua A. Granek. Rank order metrics for quantifying the association of sequence features with gene regulation
219 -- 227Jakob Skou Pedersen, Jotun Hein. Gene finding with a hidden Markov model of genome structure and evolution
228 -- 233Xiaoqiu Huang, Kun-Mao Chao. A generalized global alignment algorithm
234 -- 240Jack Cao, Rosemarie Panetta, Shiyi Yue, Alain Steyaert, Michele Young-Bellido, Sultan Ahmad. A naive Bayes model to predict coupling between seven transmembrane domain receptors, and G-proteins
241 -- 248Iwei Yeh, Peter D. Karp, Natalya Fridman Noy, Russ B. Altman. Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO)
249 -- 255Gregory P. Harhay, John W. Keele. Positional candidate gene selection from livestock EST databases using Gene Ontology
256 -- 260Myung-Hoon Chung, Chul Koo Kim, Kyun Nahm. Fractional populations in multiple gene inheritance
261 -- 269Steffen Klamt, Jörg Stelling, Martin Ginkel, Ernst Dieter Gilles. FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps
270 -- 277Hongwu Ma, An-Ping Zeng. Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
278 -- 282Peter Ernst, Karl-Heinz Glatting, Sándor Suhai. A task framework for the web interface W2H
283 -- 284Felix Kokocinski, Gunnar Wrobel, Meinhard Hahn, Peter Lichter. QuickLIMS: facilitating the data management for DNA-microarray fabrication
285 -- 286Ming-Hua Hsieh, Wei-Che Hsu, Sung-Kay Chiu, Chi-Meng Tzeng. An efficient algorithm for minimal primer set selection
287 -- 288Xiayi Ke, Lon R. Cardon. Efficient selective screening of haplotype tag SNPs
289 -- 290David Posada, Carsten Wiuf. Simulating haplotype blocks in the human genome
291 -- 292Jeremy M. R. Martin, Lan J. Mackay, Christopher J. Rawlings. Pedstrip: extracting a maximal subset of available, unrelated individuals from a pedigree
293 -- 294Yihua Zhou, Jingdong Liu. AVA: visual analysis of gene expression microarray data
295 -- 296Paul Pavlidis, William Stafford Noble. Matrix2png: a utility for visualizing matrix data
297 -- 298Lusheng Wang, Ying Xu 0002. SEGID: Identifying Interesting Segments in (Multiple) Sequence Alignments
299 -- 300Peter De Rijk, Jan Wuyts, Rupert De Wachter. RnaViz 2: an improved representation of RNA secondary structure
301 -- 302Michael J. Sanderson. r8s: inferring absolute rates of molecular evolution, divergence times in the absence of a molecular clock
303 -- 304Jack A. M. Leunissen. Chimera: construction of chimeric sequences for phylogenetic analysis
305 -- 306Kazuharu Arakawa, Koya Mori, Katsuhiko Ikeda, Tatekimi Matsuzaki, Yusuke Kobayashi, Masaru Tomita. G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining
307 -- 308Zemin Zhang, William I. Wood. A profile hidden Markov model for signal peptides generated by HMMER
309 -- 310Kunde Ramamoorthy Govindarajan, Pandjassarame Kangueane, Tin Wee Tan, Shoba Ranganathan. MPID: MHC-Peptide Interaction Database for sequence-structure-function information on peptides binding to MHC molecules
313 -- 314Alessandro Pintar, Oliviero Carugo, Sándor Pongor. DPX: for the analysis of the protein core
315 -- 316Jens P. Linge, Michael Habeck, Wolfgang Rieping, Michael Nilges. ARIA: automated NOE assignment and NMR structure calculation
317 -- 318Byong-Hyon Ju, Byungkyu Park, Jong H. Park, Kyungsook Han. Visualization and analysis of protein interactions