| 3201 | -- | 3212 | Julia Handl, Joshua D. Knowles, Douglas B. Kell. Computational cluster validation in post-genomic data analysis |
| 3213 | -- | 3216 | Mingyi Liu, Shaoping Wu, Heiko Walch, Andrei Grigoriev. Exon-domain correlation and its corollaries |
| 3217 | -- | 3226 | Jason McDermott, Roger Eugene Bumgarner, Ram Samudrala. Functional annotation from predicted protein interaction networks |
| 3227 | -- | 3233 | Hsin-Nan Lin, Jia-Ming Chang, Kuen-Pin Wu, Ting-Yi Sung, Wen-Lian Hsu. HYPROSP II-A knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence |
| 3234 | -- | 3240 | Daeui Park, Semin Lee, Dan M. Bolser, Michael Schroeder, Michael Lappe, Donghoon Oh, Jong Bhak. Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map) |
| 3241 | -- | 3247 | Jason Weston, Christina S. Leslie, Eugene Ie, Dengyong Zhou, André Elisseeff, William Stafford Noble. Semi-supervised protein classification using cluster kernels |
| 3255 | -- | 3263 | Dmitry Lupyan, Alejandra Leo-Macias, Angel R. Ortiz. A new progressive-iterative algorithm for multiple structure alignment |
| 3264 | -- | 3272 | Jianhua Hu, Fei Zou, Fred A. Wright. Practical FDR-based sample size calculations in microarray experiments |
| 3273 | -- | 3278 | Andrei S. Rodin, Eric Boerwinkle. Mining genetic epidemiology data with Bayesian networks I: Bayesian networks and example application (plasma apoE levels) |
| 3279 | -- | 3285 | Yin Liu, Nianjun Liu, Hongyu Zhao. Inferring protein-protein interactions through high-throughput interaction data from diverse organisms |
| 3286 | -- | 3293 | Patrick Flaherty, Guri Giaever, Jochen Kumm, Michael I. Jordan, Adam P. Arkin. A latent variable model for chemogenomic profiling |
| 3294 | -- | 3300 | Hao Yu, Xiaoyan Zhu, Minlie Huang, Ming Li. Discovering patterns to extract protein-protein interactions from the literature: Part II |
| 3301 | -- | 3307 | Annette M. Molinaro, Richard Simon, Ruth M. Pfeiffer. Prediction error estimation: a comparison of resampling methods |
| 3308 | -- | 3311 | Adam A. Margolin, Joel Greshock, Tara L. Naylor, Yael Mosse, John M. Maris, Graham Bignell, Alexander I. Saeed, John Quackenbush, Barbara L. Weber. CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data |
| 3312 | -- | 3313 | Anke Busch, Sebastian Will, Rolf Backofen. SECISDesign: a server to design SECIS-elements within the coding sequence |
| 3314 | -- | 3315 | Andrew E. Firth, Wayne M. Patrick. Statistics of protein library construction |
| 3316 | -- | 3317 | Swanand P. Gore, David F. Burke, Tom L. Blundell. PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes |
| 3318 | -- | 3319 | Jason Vertrees, Phillip Barritt, Steve Whitten, Vincent J. Hilser. COREX/BEST server: a web browser-based program that calculates regional stability variations within protein structures |
| 3320 | -- | 3321 | Fabrice Jossinet, Eric Westhof. Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure |
| 3322 | -- | 3323 | Zoltán Gáspári, Kristian Vlahovicek, Sándor Pongor. Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm |
| 3324 | -- | 3326 | Amira Djebbari, Svetlana Karamycheva, Eleanor Howe, John Quackenbush. MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms |
| 3327 | -- | 3328 | Liskin Swint-Kruse, Curties S. Brown. Resmap: automated representation of macromolecular interfaces as two-dimensional networks |
| 3329 | -- | 3330 | Hongseok Yun, Dong-Yup Lee, Joonwoo Jeong, Seunghyun Lee, Sang Yup Lee. MFAML: a standard data structure for representing and exchanging metabolic flux models |