Journal: Bioinformatics

Volume 21, Issue 4

423 -- 429Jyotsna Kasturi, Raj Acharya. Clustering of diverse genomic data using information fusion
430 -- 438Aditya Vailaya, Peter Bluvas, Robert Kincaid, Allan Kuchinsky, Michael L. Creech, Annette Adler. An architecture for biological information extraction and representation
439 -- 444Daisuke Komura, Hiroshi Nakamura, Shuichi Tsutsumi, Hiroyuki Aburatani, Sigeo Ihara. Multidimensional support vector machines for visualization of gene expression data
445 -- 450Osman Abul, Reda Alhajj, Faruk Polat, Ken Barker. Finding differentially expressed genes for pattern generation
451 -- 455Nadia Bolshakova, Francisco Azuaje, Padraig Cunningham. An integrated tool for microarray data clustering and cluster validity assessment
456 -- 463Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
464 -- 470Tarjei S. Mikkelsen, James E. Galagan, Jill P. Mesirov. Improving genome annotations using phylogenetic profile anomaly detection
471 -- 482Te-Ming Chen, Chung-Chin Lu, Wen-Hsiung Li. Prediction of splice sites with dependency graphs and their expanded bayesian networks
483 -- 491Gaurav Sachdeva, Kaushal Kumar, Preti Jain, Srinivasan Ramachandran. SPAAN: a software program for prediction of adhesins and adhesin-like proteins using neural networks
492 -- 501Veronica Vinciotti, Raya Khanin, Davide D Alimonte, Xiaohui Liu, N. Cattini, G. Hotchkiss, G. Bucca, O. de Jesus, J. Rasaiyaah, Colin P. Smith, Paul Kellam, Ernst Wit. An experimental evaluation of a loop versus a reference design for two-channel microarrays
502 -- 508Paul Delmar, Stéphane Robin, Jean-Jacques Daudin. VarMixt: efficient variance modelling for the differential analysis of replicated gene expression data
509 -- 516Liping Ji, Kian-Lee Tan. Identifying time-lagged gene clusters using gene expression data
517 -- 528Byung-Soo Kim, Inyoung Kim, Sunho Lee, SangCheol Kim, Sun Young Rha, Hyun Cheol Chung. Statistical methods of translating microarray data into clinically relevant diagnostic information in colorectal cancer
529 -- 536Zhong Guan, Hongyu Zhao. A semiparametric approach for marker gene selection based on gene expression data
537 -- 539Paul Stothard, David S. Wishart. Circular genome visualization and exploration using CGView
540 -- 541Martín Sarachu, Marc Colet. wEMBOSS: a web interface for EMBOSS
542 -- 544Derek Kisman, Ming Li, Bin Ma, Li Wang. tPatternHunter: gapped, fast and sensitive translated homology search
545 -- 547D. Charif, Jean Thioulouse, J. R. Lobry, Guy Perrière. Online synonymous codon usage analyses with the ade4 and seqinR packages
548 -- 550Jinsoo Kim, Jungmin Seo, Young Seek Lee, Sangsoo Kim. TFExplorer: integrated analysis database for predicted transcription regulatory elements
551 -- 553Allegra Via, Andreas Zanzoni, Manuela Helmer-Citterich. Seq2Struct: a resource for establishing sequence-structure links
554 -- 556Andreas Buness, Wolfgang Huber, Klaus Steiner, Holger Sültmann, Annemarie Poustka. arrayMagic: two-colour cDNA microarray quality control, preprocessing
557 -- 559X. Kong, Tara Cox Matise. MAP-O-MAT: internet-based linkage mapping
560 -- 561Brett G. Olivier, Johann M. Rohwer, Jan-Hendrik S. Hofmeyr. Modelling cellular systems with PySCeS