| 1157 | -- | 0 | Andrew E. Torda, Thomas Lengauer. Editorial |
| 1158 | -- | 1165 | Annette Höglund, Pierre Dönnes, Torsten Blum, Hans-Werner Adolph, Oliver Kohlbacher. MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition |
| 1166 | -- | 1171 | Hannes Luz, Martin Vingron. Family specific rates of protein evolution |
| 1172 | -- | 1176 | Ivo L. Hofacker, Peter F. Stadler. Memory efficient folding algorithms for circular RNA secondary structures |
| 1177 | -- | 1182 | Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker. Thermodynamics of RNA-RNA binding |
| 1183 | -- | 1189 | Jean-Christophe Nebel. Generation of 3D templates of active sites of proteins with rigid prosthetic groups |
| 1190 | -- | 1197 | Alexander E. Kel, Tatiana Konovalova, T. Waleev, Evgeny Cheremushkin, Olga V. Kel-Margoulis, Edgar Wingender. Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations |
| 1198 | -- | 1206 | Ari Rantanen, Taneli Mielikäinen, Juho Rousu, Hannu Maaheimo, Esko Ukkonen. Planning optimal measurements of isotopomer distributions for estimation of metabolic fluxes |
| 1207 | -- | 1210 | Loris Nanni, Alessandra Lumini. An ensemble of K-local hyperplanes for predicting protein-protein interactions |
| 1211 | -- | 1216 | Hideki Nagasaki, Masanori Arita, Tatsuya Nishizawa, Makiko Suwa, Osamu Gotoh. Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns |
| 1217 | -- | 1224 | Anton Valouev, Yu Zhang, David C. Schwartz, Michael S. Waterman. Refinement of optical map assemblies |
| 1225 | -- | 1231 | Faisal Ababneh, Lars S. Jermiin, Chunsheng Ma, John Robinson. Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences |
| 1232 | -- | 1238 | Joo Chuan Tong, Guanglan Zhang, Tin Wee Tan, J. Thomas August, Vladimir Brusic, Shoba Ranganathan. Prediction of HLA-DQ3.2ß Ligands: evidence of multiple registers in class II binding peptides |
| 1239 | -- | 1244 | Ritesh Agrawal, Gary D. Stormo. Using mRNAs lengths to accurately predict the alternatively spliced gene products in ::::Caenorhabditis elegans:::: |
| 1245 | -- | 1250 | Daniel P. Berrar, Ian Bradbury, Werner Dubitzky. Avoiding model selection bias in small-sample genomic datasets |
| 1251 | -- | 1258 | Kristof Engelen, Bart Naudts, Bart De Moor, Kathleen Marchal. A calibration method for estimating absolute expression levels from microarray data |
| 1259 | -- | 1268 | Desheng Huang, Wei Pan. Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data |
| 1269 | -- | 1271 | Tijl De Bie, Nello Cristianini, Jeffery P. Demuth, Matthew W. Hahn. CAFE: a computational tool for the study of gene family evolution |
| 1272 | -- | 1274 | Richard E. Kennedy, Robnet T. Kerns, Xiangrong Kong, Kellie J. Archer, Michael F. Miles. ::::SScore::::: an R package for detecting differential gene expression without gene expression summaries |
| 1275 | -- | 1277 | Sarah M. Keating, Benjamin J. Bornstein, Andrew Finney, Michael Hucka. SBMLToolbox: an SBML toolbox for MATLAB users |
| 1278 | -- | 1279 | Amanda M. White, Don Simone Daly, Susan M. Varnum, Kevin K. Anderson, Nikki Bollinger, Richard C. Zangar. ProMAT: protein microarray analysis tool |
| 1280 | -- | 1281 | Jacek Sroka, Grzegorz Kaczor, Jerzy Tyszkiewicz, Andrzej M. Kierzek. XQTav: an XQuery processor for Taverna environment |
| 1282 | -- | 1283 | Simon Barkow, Stefan Bleuler, Amela Prelic, Philip Zimmermann, Eckart Zitzler. BicAT: a biclustering analysis toolbox |
| 1284 | -- | 1285 | Rasko Leinonen, Francesco Nardone, Weimin Zhu, Rolf Apweiler. UniSave: the UniProtKB Sequence/Annotation Version database |
| 1286 | -- | 1287 | Ge Gao, Yingfu Zhong, Anyuan Guo, Qihui Zhu, Wen Tang, Weimou Zheng, Xiaocheng Gu, Liping Wei, Jingchu Luo. DRTF: a database of rice transcription factors |