Journal: Bioinformatics

Volume 22, Issue 15

1809 -- 1814Mikael Bodén, Timothy L. Bailey. Identifying sequence regions undergoing conformational change via predicted continuum secondary structure
1815 -- 1822Isabelle Dupanloup, Henrik Kaessmann. Evolutionary simulations to detect functional lineage-specific genes
1823 -- 1831Anke Busch, Rolf Backofen. INFO-RNA - a fast approach to inverse RNA folding
1832 -- 1837Hyeon S. Son, Seung-Yeon Kim, Jooyoung Lee, Kyu-Kwang Han. Application of the multiensemble sampling to the equilibrium folding of proteins
1838 -- 1845Marc N. Offman, Paul W. Fitzjohn, Paul A. Bates. Developing a move-set for protein model refinement
1846 -- 1854Gennady Verkhivker. Imprint of evolutionary conservation and protein structure variation on the binding function of protein tyrosine kinases
1855 -- 1862De-Shuang Huang, Chun-Hou Zheng. Independent component analysis-based penalized discriminant method for tumor classification using gene expression data
1863 -- 1870David S. Skibbe, Xiujuan Wang, Xuefeng Zhao, Lisa A. Borsuk, Dan Nettleton, Patrick S. Schnable. Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes
1871 -- 1878Steven Carroll, Vladimir Pavlovic. Protein classification using probabilistic chain graphs and the Gene Ontology structure
1879 -- 1885Ralph Gauges, Ursula Rost, Sven Sahle, Katja Wegner. A model diagram layout extension for SBML
1886 -- 1894Simon J. Galbraith, Linh M. Tran, James C. Liao. Transcriptome network component analysis with limited microarray data
1895 -- 1901Jordi Vidal Rodríguez, Jaap A. Kaandorp, Maciej Dobrzynski, Joke G. Blom. Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in ::::Escherichia coli::::
1902 -- 1909Matthew Bellew, Marc Coram, Matthew Fitzgibbon, Mark Igra, Tim Randolph, Pei Wang, Damon May, Jimmy K. Eng, Ruihua Fang, ChenWei Lin, Jinzhi Chen, David Goodlett, Jeffrey Whiteaker, Amanda G. Paulovich, Martin McIntosh. A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS
1910 -- 1916Joel H. Saltz, Scott Oster, Shannon Hastings, Stephen Langella, Tahsin M. Kurç, William Sanchez, Manav Kher, Arumani Manisundaram, Krishnakant Shanbhag, Peter A. Covitz. caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid
1917 -- 1918Karol Szafranski, Niels Jahn, Matthias Platzer. tuple_plot: Fast pairwise nucleotide sequence comparison with noise suppression
1919 -- 1920Wessel N. van Wieringen, Jeroen A. M. Belien, Sjoerd J. Vosse, Eskeatnaf M. Achame, Bauke Ylstra. ACE-it: a tool for genome-wide integration of gene dosage and RNA expression data
1921 -- 1923M. M. Morin, Bernard M. E. Moret. NetGen: generating phylogenetic networks with diploid hybrids
1924 -- 1925Joshua Gould, Gad Getz, Stefano Monti, Michael Reich, Jill P. Mesirov. Comparative gene marker selection suite
1926 -- 1927Jin-long Li, Miao-Xin Li, Yan-Fang Guo, H.-Y. Deng, Hong-Wen Deng. JADE: a distributed Java application for deleterious genomic mutation (DGM) estimation
1928 -- 1929Xavier Solé, Elisabet Guinó, Joan Valls, Raquel Iniesta, Víctor Moreno. SNPStats: a web tool for the analysis of association studies
1930 -- 1931Axel von Kamp, Stefan Schuster. Metatool 5.0: fast and flexible elementary modes analysis