Journal: Bioinformatics

Volume 22, Issue 19

2319 -- 0Alex Bateman, Alfonso Valencia. Structural genomics meets computational biology
2320 -- 2325Yiming Cheng, Robert M. Miura, Bin Tian. Prediction of mRNA polyadenylation sites by support vector machine
2326 -- 2332Bin Song, Jeong-Hyeon Choi, Guangyu Chen, Jacek Szymanski, Guo-Qiang Zhang, Anthony K. H. Tung, Jaewoo Kang, Sun Kim, Jiong Yang. ARCS: an aggregated related column scoring scheme for aligned sequences
2333 -- 2339Enrico Ferraro, Allegra Via, Gabriele Ausiello, Manuela Helmer-Citterich. A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity
2340 -- 2347Aalt D. J. van Dijk, Alexandre M. J. J. Bonvin. Solvated docking: introducing water into the modelling of biomolecular complexes
2348 -- 2355Gavin C. Cawley, Nicola L. C. Talbot. Gene selection in cancer classification using sparse logistic regression with Bayesian regularization
2356 -- 2363Chad A. Davis, Fabian Gerick, Volker Hintermair, Caroline C. Friedel, Katrin Fundel, Robert Küffner, Ralf Zimmer. Reliable gene signatures for microarray classification: assessment of stability and performance
2364 -- 2372Darlene R. Goldstein. Partition resampling and extrapolation averaging: approximation methods for quantifying gene expression in large numbers of short oligonucleotide arrays
2373 -- 2380Sek Won Kong, William T. Pu, Peter J. Park. A multivariate approach for integrating genome-wide expression data and biological knowledge
2381 -- 2387Ann L. Oberg, Douglas W. Mahoney, Karla V. Ballman, Terry M. Therneau. Joint estimation of calibration and expression for high-density oligonucleotide arrays
2388 -- 2395Wei Pan, Xiaotong Shen, Aixiang Jiang, Robert P. Hebbel. Semi-supervised learning via penalized mixture model with application to microarray sample classification
2396 -- 2404Antonio Reverter, Aaron Ingham, Sigrid A. Lehnert, Siok-Hwee Tan, Yonghong Wang, Abhirami Ratnakumar, Brian P. Dalrymple. Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer
2405 -- 2412Anbupalam Thalamuthu, Indranil Mukhopadhyay, Xiaojing Zheng, George C. Tseng. Evaluation and comparison of gene clustering methods in microarray analysis
2413 -- 2420Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen. Inferring gene regulatory networks from multiple microarray datasets
2421 -- 2429Carol Friedman, Tara Borlawsky, Lyudmila Shagina, H. Rosie Xing, Yves A. Lussier. Bio-Ontology and text: bridging the modeling gap
2430 -- 2436Chao Sima, Edward R. Dougherty. What should be expected from feature selection in small-sample settings
2437 -- 2438Nicholas Navin, Vladimir Grubor, Jim Hicks, Evan Leibu, Elizabeth Thomas, Jennifer Troge, Michael Riggs, Pär Lundin, Susanne Månér, Jonathan Sebat, Anders Zetterberg, Michael Wigler. PROBER: oligonucleotide FISH probe design software
2439 -- 2440Fabrice Armougom, Olivier Poirot, Sébastien Moretti, Desmond G. Higgins, Phillip Bucher, Vladimir Keduas, Cédric Notredame. APDB: a web server to evaluate the accuracy of sequence alignments using structural information
2441 -- 2443Karsten Hiller, Andreas Grote, Matthias Maneck, Richard Münch, Dieter Jahn. JVirGel 2.0: computational prediction of proteomes separated via two-dimensional gel electrophoresis under consideration of membrane and secreted proteins
2444 -- 2445Conrad Plake, Torsten Schiemann, Marcus Pankalla, Jörg Hakenberg, Ulf Leser. ALIBABA: PubMed as a graph
2446 -- 2451Xiao-Lin Wu, Larry J. Forney, Paul Joyce. Comments on Bayesian hierarchical error model for analysis of gene expression data
2452 -- 0HyungJun Cho, Jae K. Lee. Response to comments on Bayesian Hierarchical Error Model for Analysis of Gene Expression Data
2453 -- 0. Corrigendum