Journal: Bioinformatics

Volume 22, Issue 21

2581 -- 2584Kira S. Makarova, Nick V. Grishin, Eugene V. Koonin. The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria
2585 -- 2589Yu Wang, Tobias Hindemitt, Klaus F. X. Mayer. Significant sequence similarities in promoters and precursors of ::::Arabidopsis thaliana:::: non-conserved microRNAs
2590 -- 2596Chunlin Wang, Chris H. Q. Ding, Richard F. Meraz, Stephen R. Holbrook. PSoL: a positive sample only learning algorithm for finding non-coding RNA genes
2597 -- 2603Levon Budagyan, Ruben Abagyan. Weighted quality estimates in machine learning
2604 -- 2611Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller. Maximum likelihood of phylogenetic networks
2612 -- 2618Dominique Douguet, Huei-Chi Chen, Andrey Tovchigrechko, Ilya A. Vakser. DOCKGROUND resource for studying protein-protein interfaces
2619 -- 2627Eran Eyal, Lee-Wei Yang, Ivet Bahar. Anisotropic network model: systematic evaluation and a new web interface
2628 -- 2634Fabian Birzele, Stefan Kramer. A new representation for protein secondary structure prediction based on frequent patterns
2635 -- 2642Ronglai Shen, Debashis Ghosh, Arul M. Chinnaiyan, Zhaoling Meng. Eigengene-based linear discriminant model for tumor classification using gene expression microarray data
2643 -- 2649Natasa Rajicic, Dianne M. Finkelstein, David A. Schoenfeld. Survival analysis of longitudinal microarrays
2650 -- 2657Chao Cheng, Xiaotu Ma, Xiting Yan, Fengzhu Sun, Lei M. Li. MARD: a new method to detect differential gene expression in treatment-control time courses
2658 -- 2666A. Callegaro, Dario Basso, Silvio Bicciato. A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions
2667 -- 2673Joe Faith, Robert Mintram, Maia Angelova. Targeted projection pursuit for visualizing gene expression data classifications
2674 -- 2680Nicole Radde, Jutta Gebert, Christian V. Forst. Systematic component selection for gene-network refinement
2681 -- 2687Visakan Kadirkamanathan, Jing Yang, Stephen A. Billings, Phillip C. Wright. Markov Chain Monte Carlo Algorithm based metabolic flux distribution analysis on ::::Corynebacterium glutamicum::::
2688 -- 2690Alexandros Stamatakis. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
2691 -- 2692Brajesh Kumar Rai, Carlos J. Madrid-Aliste, J. Eduardo Fajardo, András Fiser. MMM: a sequence-to-structure alignment protocol
2693 -- 2694Shantanu Sharma, Feng Ding, Huifen Nie, Daniel Watson, Aditya Unnithan, Jameson Lopp, Diane Pozefsky, Nikolay V. Dokholyan. iFold: a platform for interactive folding simulations of proteins
2695 -- 2696Barry J. Grant, Ana P. C. Rodrigues, Karim M. ElSawy, J. Andrew McCammon, Leo S. D. Caves. Bio3d: an R package for the comparative analysis of protein structures
2697 -- 2698Tsun-Po Yang, Ting-Yu Chang, Chi-Hung Lin, Ming-Ta Hsu, Hsei-Wei Wang. ArrayFusion: a web application for multi-dimensional analysis of CGH, SNP and microarray data
2699 -- 2701Kellie J. Archer, Tobias Guennel. An application for assessing quality of RNA hybridized to Affymetrix GeneChips
2702 -- 2703Grégory Deceliere, Yann Letrillard, Sandrine Charles, Christian Biémont. TESD: a transposable element dynamics simulation environment
2704 -- 2705Zhike Zi, Edda Klipp. SBML-PET: a Systems Biology Markup Language-based parameter estimation tool
2706 -- 2708Ronald C. Taylor, Anuj Shah, Charles Treatman, Meridith Blevins. SEBINI: Software Environment for BIological Network Inference
2709 -- 2710Markus Ulrich, Constantin Kappel, Joël Beaudouin, Stefan Hezel, Jochen Ulrich, Roland Eils. Tropical - parameter estimation and simulation of reaction-diffusion models based on spatio-temporal microscopy images