| 2807 | -- | 2815 | Ali Bashir, Yu-Tsueng Liu, Benjamin J. Raphael, Dennis Carson, Vineet Bafna. Optimization of primer design for the detection of variable genomic lesions in cancer |
| 2816 | -- | 2822 | Ersin Emre Oren, Candan Tamerler, Deniz Sahin, Marketa Hnilova, Urartu Ozgur Safak Seker, Mehmet Sarikaya, Ram Samudrala. A novel knowledge-based approach to design inorganic-binding peptides |
| 2823 | -- | 2828 | Bo Jiang, Michael Q. Zhang, Xuegong Zhang. OSCAR: One-class SVM for accurate recognition of ::::cis::::-elements |
| 2829 | -- | 2835 | Michael J. Sweredoski, Kevin J. Donovan, Bao D. Nguyen, A. J. Shaka, Pierre Baldi. Minimizing the overlap problem in protein NMR: a computational framework for precision amino acid labeling |
| 2836 | -- | 2842 | Hung-Pin Peng, An-Suei Yang. Modeling protein loops with knowledge-based prediction of sequence-structure alignment |
| 2843 | -- | 2850 | Ke Chen, Lukasz A. Kurgan. PFRES: protein fold classification by using evolutionary information and predicted secondary structure |
| 2851 | -- | 2858 | Frank DiMaio, Dmitry A. Kondrashov, Eduard Bitto, Ameet Soni, Craig A. Bingman, George N. Phillips Jr., Jude W. Shavlik. Creating protein models from electron-density maps using particle-filtering methods |
| 2859 | -- | 2865 | Sanghamitra Bandyopadhyay, Anirban Mukhopadhyay, Ujjwal Maulik. An improved algorithm for clustering gene expression data |
| 2866 | -- | 2872 | Blaise Hanczar, Jean-Daniel Zucker, Corneliu Henegar, Lorenza Saitta. Feature construction from synergic pairs to improve microarray-based classification |
| 2873 | -- | 2880 | Kathe E. Bjork, Karen Kafadar. Systematic order-dependent effect in expression values, variance, detection calls and differential expression in Affymetrix GeneChips® |
| 2881 | -- | 2887 | Mark D. Robinson, Gordon K. Smyth. Moderated statistical tests for assessing differences in tag abundance |
| 2888 | -- | 2896 | Zhiwen Yu, Hau-San Wong, Hongqiang Wang. Graph-based consensus clustering for class discovery from gene expression data |
| 2897 | -- | 2902 | Willem Talloen, Djork-Arné Clevert, Sepp Hochreiter, Dhammika Amaratunga, Luc Bijnens, Stefan Kass, Hinrich W. H. Göhlmann. I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data |
| 2903 | -- | 2909 | Jiexin Zhang, Yuan Ji, Li Zhang. Extracting three-way gene interactions from microarray data |
| 2910 | -- | 2917 | Sangeeta B. English, Atul J. Butte. Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes |
| 2918 | -- | 2925 | Ali Torkamani, Nicholas J. Schork. Accurate prediction of deleterious protein kinase polymorphisms |
| 2926 | -- | 2933 | Ming Zheng, Peng Lu, Yanzhou Liu, Joseph Pease, Jonathan Usuka, Guochun Liao, Gary Peltz. 2D NMR metabonomic analysis: a novel method for automated peak alignment |
| 2934 | -- | 2941 | Atsushi Hijikata, Hiroshi Kitamura, Yayoi Kimura, Ryo Yokoyama, Yuichi Aiba, Yanyuan Bao, Shigeharu Fujita, Koji Hase, Shohei Hori, Yasuyuki Ishii, Osami Kanagawa, Hiroshi Kawamoto, Kazuya Kawano, Haruhiko Koseki, Masato Kubo, Ai Kurita-Miki, Tomohiro Kurosaki, Kyoko Masuda, Mitsumasa Nakata, Keisuke Oboki, Hiroshi Ohno, Mariko Okamoto, Yoshimichi Okayama, Jiyang O-Wang, Hirohisa Saito, Takashi Saito, Machie Sakuma, Katsuaki Sato, Kaori Sato, Ken-ichiro Seino, Ruka Setoguchi, Yuki Tamura, Masato Tanaka, Masaru Taniguchi, Ichiro Taniuchi, Annabelle Teng, Takeshi Watanabe, Hiroshi Watarai, Sho Yamasaki, Osamu Ohara. Construction of an open-access database that integrates cross-reference information from the transcriptome and proteome of immune cells |
| 2934 | -- | 2941 | Atsushi Hijikata, Hiroshi Kitamura, Yayoi Kimura, Ryo Yokoyama, Yuichi Aiba, Yanyuan Bao, Shigeharu Fujita, Koji Hase, Shohei Hori, Yasuyuki Ishii, Osami Kanagawa, Hiroshi Kawamoto, Kazuya Kawano, Haruhiko Koseki, Masato Kubo, Ai Kurita-Miki, Tomohiro Kurosaki, Kyoko Masuda, Mitsumasa Nakata, Keisuke Oboki, Hiroshi Ohno, Mariko Okamoto, Yoshimichi Okayama, Jiyang O-Wang, Hirohisa Saito, Takashi Saito, Machie Sakuma, Katsuaki Sato, Kaori Sato, Ken-ichiro Seino, Ruka Setoguchi, Yuki Tamura, Masato Tanaka, Masaru Taniguchi, Ichiro Taniuchi, Annabelle Teng, Takeshi Watanabe, Hiroshi Watarai, Sho Yamasaki, Osamu Ohara. Construction of an open-access database that integrates cross-reference information from the transcriptome and proteome of immune cells |
| 2942 | -- | 2944 | William R. Jeck, Josephine A. Reinhardt, David A. Baltrus, Matthew T. Hickenbotham, Vincent Magrini, Elaine R. Mardis, Jeffery L. Dangl, Corbin D. Jones. Extending assembly of short DNA sequences to handle error |
| 2945 | -- | 2946 | Taishin Kin, Yukiteru Ono. Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat |
| 2947 | -- | 2948 | M. A. Larkin, Gordon Blackshields, N. P. Brown, R. Chenna, Paul A. McGettigan, Hamish McWilliam, Franck Valentin, Iain M. Wallace, Andreas Wilm, Rodrigo Lopez, Julie Dawn Thompson, Toby J. Gibson, Desmond G. Higgins. Clustal W and Clustal X version 2.0 |
| 2949 | -- | 2951 | Sergey A. Shiryev, Jason S. Papadopoulos, Alejandro A. Schäffer, Richa Agarwala. Improved BLAST searches using longer words for protein seeding |
| 2952 | -- | 2953 | John Archer, David L. Robertson. ::::CTree::::: comparison of clusters between phylogenetic trees made easy |
| 2957 | -- | 2958 | Matthias Bernt, Daniel Merkle, Kai Ramsch, Guido Fritzsch, Marleen Perseke, Detlef Bernhard, Martin Schlegel, Peter F. Stadler, Martin Middendorf. CREx: inferring genomic rearrangements based on common intervals |
| 2959 | -- | 2960 | Namhee Kim, Jin Sup Shin, Shereef Elmetwaly, Hin Hark Gan, Tamar Schlick. RAGPOOLS: RNA-As-Graph-Pools - a web server for assisting the design of structured RNA pools for ::::in vitro:::: selection |