| 2961 | -- | 2968 | Alexis A. Rodriguez, Tanuja Bompada, Mustafa H. Syed, Parantu K. Shah, Natalia Maltsev. Evolutionary analysis of enzymes using Chisel |
| 2969 | -- | 2977 | Lucian Ilie, Silvana Ilie. Multiple spaced seeds for homology search |
| 2978 | -- | 2986 | Stephen McCauley, Saskia de Groot, Thomas Mailund, Jotun Hein. Annotation of selection strengths in viral genomes |
| 2987 | -- | 2992 | Malik Yousef, Segun Jung, Andrew V. Kossenkov, Louise C. Showe, Michael K. Showe. Naïve Bayes for microRNA target predictions - machine learning for microRNA targets |
| 2993 | -- | 3000 | Patricia Buendia, Giri Narasimhan. Sliding MinPD: building evolutionary networks of serial samples via an automated recombination detection approach |
| 3001 | -- | 3008 | J. R. Davies, R. M. Jackson, Kanti V. Mardia, C. C. Taylor. The Poisson Index: a new probabilistic model for protein-ligand binding site similarity |
| 3009 | -- | 3015 | Chris Deutsch, Bala Krishnamoorthy. Four-Body Scoring Function for Mutagenesis |
| 3016 | -- | 3023 | Franz F. Roos, Riko Jacob, Jonas Grossmann, Bernd Fischer, Joachim M. Buhmann, Wilhelm Gruissem, Sacha Baginsky, Peter Widmayer. PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra |
| 3024 | -- | 3031 | Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron. Improved detection of overrepresentation of Gene-Ontology annotations with parent-child analysis |
| 3032 | -- | 3038 | Nandini Raghavan, An M. I. M. De Bondt, Willem Talloen, Dieder Moechars, Hinrich W. H. Göhlmann, Dhammika Amaratunga. The high-level similarity of some disparate gene expression measures |
| 3039 | -- | 3047 | Shinsheng Yuan, Ker-Chau Li. Context-dependent clustering for dynamic cellular state modeling of microarray gene expression |
| 3048 | -- | 3055 | Bonnie Kirkpatrick, Carlos Santos Armendariz, Richard M. Karp, Eran Halperin. HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling |
| 3056 | -- | 3064 | Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen. Inferring transcriptional regulatory networks from high-throughput data |
| 3065 | -- | 3072 | Richard Pelikan, William L. Bigbee, David Malehorn, James Lyons-Weiler, Milos Hauskrecht. Intersession reproducibility of mass spectrometry profiles and its effect on accuracy of multivariate classification models |
| 3073 | -- | 3079 | Andrew K. Smith, Kei Cheung, Michael Krauthammer, Martin H. Schultz, Mark Gerstein. Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics |
| 3080 | -- | 3087 | Lennart J. G. Post, Marco Roos, M. Scott Marshall, Roel van Driel, Timo M. Breit. A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data |
| 3088 | -- | 3090 | Sungsoo Kang, Sung-Jin Yang, Sangsoo Kim, Jong Bhak. CONSORF: a consensus prediction system for prokaryotic coding sequences |
| 3091 | -- | 3092 | John E. Major. Genomic mutation consequence calculator |
| 3093 | -- | 3094 | Matthew R. Huska, Henrik Buschmann, Miguel A. Andrade-Navarro. BiasViz: visualization of amino acid biased regions in protein alignments |
| 3095 | -- | 3097 | Emmanuelle Becker, Aurélie Cotillard, Vincent Meyer, Hocine Madaoui, Raphaël Guérois. HMM-Kalign: a tool for generating sub-optimal HMM alignments |
| 3098 | -- | 3099 | Pablo Minguez, Fátima Al-Shahrour, David Montaner, Joaquín Dopazo. Functional profiling of microarray experiments using text-mining derived bioentities |
| 3100 | -- | 3102 | Shouguo Gao, Xujing Wang. TAPPA: topological analysis of pathway phenotype association |
| 3103 | -- | 3104 | Wataru Fujibuchi, Larisa Kiseleva, Takeaki Taniguchi, Hajime Harada, Paul Horton. CellMontage: similar expression profile search server |
| 3105 | -- | 3107 | M.-X. Li, L. Jiang, S. L. Ho, Y. Q. Song, Pak Chung Sham. IGG: A tool to integrate GeneChips for genetic studies |
| 3108 | -- | 3109 | Adnane Nemri, Michael M. Neff, Michael Burrell, Jonathan D. G. Jones, David J. Studholme. Marker development for the genetic study of natural variation in ::::Arabidopsis thaliana:::: |
| 3110 | -- | 3112 | Nitin Bhardwaj, Robert V. Stahelin, Guijun Zhao, Wonhwa Cho, Hui Lu. MeTaDoR: a comprehensive resource for membrane targeting domains and their host proteins |