Journal: Bioinformatics

Volume 27, Issue 4

441 -- 448Melissa S. Cline, Rachel Karchin. Using bioinformatics to predict the functional impact of SNVs
449 -- 455Bernhard Haubold, Floyd A. Reed, Peter Pfaffelhuber. Alignment-free estimation of nucleotide diversity
456 -- 463Andrew X. Li, Manja Marz, Jing Qin, Christian M. Reidys. RNA-RNA interaction prediction based on multiple sequence alignments
464 -- 470Kana Shimizu, Koji Tsuda. SlideSort: all pairs similarity search for short reads
471 -- 478Tak-Ming Chan, Ka Chun Wong, Kin-Hong Lee, Man Hon Wong, Chi-Kong Lau, Stephen Kwok-Wing Tsui, Kwong-Sak Leung. Discovering approximate-associated sequence patterns for protein-DNA interactions
479 -- 486Thomas C. Conway, Andrew J. Bromage. Succinct data structures for assembling large genomes
487 -- 494Teppei Ebina, Hiroyuki Toh, Yutaka Kuroda. DROP: an SVM domain linker predictor trained with optimal features selected by random forest
495 -- 501Francesco C. Stingo, Marina Vannucci. Variable selection for discriminant analysis with Markov random field priors for the analysis of microarray data
502 -- 508Zhengpeng Wu, Xi Wang, Xuegong Zhang. Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq
509 -- 515Sangsoon Woo, Jeffrey T. Leek, John D. Storey. A computationally efficient modular optimal discovery procedure
516 -- 523Jiahan Li, Kiranmoy Das, Guifang Fu, Runze Li, Rongling Wu. The Bayesian lasso for genome-wide association studies
524 -- 533Frank-Michael Schleif, T. Riemer, U. Börner, L. Schnapka-Hille, M. Cross. Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications
534 -- 540Alberto Rezola, Luis F. de Figueiredo, M. Brock, Jon Pey, Adam Podhorski, Christoph Wittmann, Stefan Schuster, Alexander Bockmayr, Francisco J. Planes. Exploring metabolic pathways in genome-scale networks via generating flux modes
541 -- 547Paul A. Jensen, Jason A. Papin. Functional integration of a metabolic network model and expression data without arbitrary thresholding
548 -- 555Ritwik Layek, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty. Cancer therapy design based on pathway logic
556 -- 563Wessel N. van Wieringen, Aad van der Vaart. Statistical analysis of the cancer cell s molecular entropy using high-throughput data
564 -- 571Hang Xiao, Ying Li, Jiulin Du, Axel Mosig. ::::Ct3d: :::: tracking microglia motility in 3D using a novel cosegmentation approach
572 -- 577Jürgen Hartler, Martin Trötzmüller, Chandramohan Chitraju, Friedrich Spener, Harald C. Köfeler, Gerhard G. Thallinger. Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data
578 -- 579Marten Boetzer, Christiaan V. Henkel, Hans J. Jansen, Derek Butler, Walter Pirovano. Scaffolding pre-assembled contigs using SSPACE
580 -- 581David L. A. Wood, Qinying Xu, John V. Pearson, Nicole Cloonan, Sean M. Grimmond. X-MATE: a flexible system for mapping short read data
582 -- 583Jose Ignacio Agulleiro Baldo, José-Jesús Fernández. Fast tomographic reconstruction on multicore computers
584 -- 586Clive G. Bowsher. Automated analysis of information processing, kinetic independence and modular architecture in biochemical networks using MIDIA
587 -- 588Leonardo Bottolo, Marc Chadeau-Hyam, David I. Hastie, Sarah R. Langley, Enrico Petretto, Laurence Tiret, David Tregouet, Sylvia Richardson. ::::ESS::::++: a C++ objected-oriented algorithm for Bayesian stochastic search model exploration
589 -- 591Mikhail Gostev, Julio Fernandez-Banet, Johan Rung, Joern Dietrich, Inga Prokopenko, Samuli Ripatti, Mark I. McCarthy, Alvis Brazma, Maria Krestyaninova. SAIL - a software system for sample and phenotype availability across biobanks and cohorts