Journal: Bioinformatics

Volume 29, Issue 7

821 -- 829Clement Chung, Andrew Emili, Brendan J. Frey. Non-parametric Bayesian approach to post-translational modification refinement of predictions from tandem mass spectrometry
830 -- 836Susanne Balzer, Ketil Malde, Markus A. Grohme, Inge Jonassen. Filtering duplicate reads from 454 pyrosequencing data
837 -- 844Pierre-Alain Jachiet, Romain Pogorelcnik, Anne Berry, Philippe Lopez, Eric Bapteste. MosaicFinder: identification of fused gene families in sequence similarity networks
845 -- 854Sander Pronk, Szilárd Páll, Roland Schulz, Per Larsson, Pär Bjelkmar, Rossen Apostolov, Michael R. Shirts, Jeremy C. Smith, Peter M. Kasson, David van der Spoel, Berk Hess, Erik Lindahl. GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
855 -- 861Douglas E. V. Pires, Raquel Cardoso de Melo Minardi, Carlos Henrique da Silveira, Frederico F. Campos, Wagner Meira Jr.. aCSM: noise-free graph-based signatures to large-scale receptor-based ligand prediction
862 -- 869Min Chen, Miao Zang, Xinlei Wang, Guanghua Xiao. A powerful Bayesian meta-analysis method to integrate multiple gene set enrichment studies
870 -- 877Jakramate Bootkrajang, Ata Kabán. Classification of mislabelled microarrays using robust sparse logistic regression
878 -- 885Yu Zhang. A dynamic Bayesian Markov model for phasing and characterizing haplotypes in next-generation sequencing
886 -- 893Liina Kamm, Dan Bogdanov, Sven Laur, Jaak Vilo. A new way to protect privacy in large-scale genome-wide association studies
894 -- 902Yonit Hoffman, Dvir Dahary, Debora Rosa Bublik, Moshe Oren, Yitzhak Pilpel. The majority of endogenous microRNA targets within Alu elements avoid the microRNA machinery
903 -- 909Arne C. Müller, Alexander Bockmayr. Fast thermodynamically constrained flux variability analysis
910 -- 916Andrea Ocone, Andrew J. Millar, Guido Sanguinetti. Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics
917 -- 924Ahmet Emre Aladag, Cesim Erten. SPINAL: scalable protein interaction network alignment
925 -- 932Beáta Reiz, Attila Kertész-Farkas, Sándor Pongor, Michael P. Myers. Chemical rule-based filtering of MS/MS spectra
933 -- 939Matthias Zytnicki, YuFei Luo, Hadi Quesneville. Efficient comparison of sets of intervals with NC-lists
940 -- 946Brian E. Ruttenberg, Gabriel Luna, Geoffrey P. Lewis, Steven K. Fisher, Ambuj K. Singh. Quantifying spatial relationships from whole retinal images
947 -- 949Gabriel Moreno-Hagelsieb, Zilin Wang, Stephanie Walsh, Aisha ElSherbiny. Phylogenomic clustering for selecting non-redundant genomes for comparative genomics
950 -- 952Bryce Cronkite-Ratcliff, Vijay Pande. MSMExplorer: visualizing Markov state models for biomolecule folding simulations
953 -- 954Jan Kosinski, Alessandro Barbato, Anna Tramontano. MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships
955 -- 956Jerome Kelleher, Nicholas H. Barton, Alison M. Etheridge. Coalescent simulation in continuous space
957 -- 959Safee Ullah Chaudhary, Sung-Young Shin, Daewon Lee, Je-Hoon Song, Kwang-Hyun Cho. ELECANS - an integrated model development environment for multiscale cancer systems biology
960 -- 962Dong-Sheng Cao, Qing-Song Xu, Yi-Zeng Liang. propy: a tool to generate various modes of Chou's PseAAC
963 -- 964Patrick Kiefer, Uwe Schmitt, Julia A. Vorholt. eMZed: an open source framework in Python for rapid and interactive development of LC/MS data analysis workflows