| 301 | -- | 304 | Yuwen Liu, Jie Zhou, Kevin P. White. RNA-seq differential expression studies: more sequence or more replication? |
| 305 | -- | 309 | Min Xiong, Bin Li, Qiang Zhu, Yun-Xing Wang, Hong-Yu Zhang. Identification of transcription factors for drug-associated gene modules and biomedical implications |
| 310 | -- | 316 | Dror Hibsh, Hadas Schori, Sol Efroni, Orit Shefi. Spatial regulation dominates gene function in the ganglia chain |
| 317 | -- | 325 | Kazunori Yamada, Kentaro Tomii. Revisiting amino acid substitution matrices for identifying distantly related proteins |
| 326 | -- | 334 | Ali May, René Pool, Erik van Dijk, Jochem Bijlard, Sanne Abeln, Jaap Heringa, K. Anton Feenstra. Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins |
| 335 | -- | 342 | Douglas E. V. Pires, David B. Ascher, Tom L. Blundell. mCSM: predicting the effects of mutations in proteins using graph-based signatures |
| 343 | -- | 352 | Luke Day, Ouala Abdelhadi Ep Souki, Andreas Alexander Albrecht, Kathleen Steinhöfel. Accessibility of microRNA binding sites in metastable RNA secondary structures in the presence of SNPs |
| 353 | -- | 359 | Hamidreza Khataee, Alan Wee-Chung Liew. A mathematical model describing the mechanical kinetics of kinesin stepping |
| 360 | -- | 368 | Yasir Rahmatallah, Frank Emmert-Streib, Galina V. Glazko. Gene Sets Net Correlations Analysis (GSNCA): a multivariate differential coexpression test for gene sets |
| 369 | -- | 376 | Chuan Gao, Nicole L. Tignor, Jacqueline Salit, Yael Strulovici-Barel, Neil R. Hackett, Ronald G. Crystal, Jason G. Mezey. HEFT: eQTL analysis of many thousands of expressed genes while simultaneously controlling for hidden factors |
| 377 | -- | 383 | Hari Krishna Yalamanchili, Bin Yan, Mulin Jun Li, Jing Qin, Zhongying Zhao, Francis Y. L. Chin, Junwen Wang. DDGni: Dynamic delay gene-network inference from high-temporal data using gapped local alignment |
| 384 | -- | 391 | Barbara Di Camillo, Francesco Sambo, Gianna Toffolo, Claudio Cobelli. ABACUS: an entropy-based cumulative bivariate statistic robust to rare variants and different direction of genotype effect |
| 392 | -- | 397 | Søren Mørk, Sune Pletscher-Frankild, Albert Pallejà Caro, Jan Gorodkin, Lars Juhl Jensen. Protein-driven inference of miRNA-disease associations |
| 398 | -- | 405 | Jianlong Peng, Jing Lu, Qiancheng Shen, Mingyue Zheng, Xiaomin Luo, Weiliang Zhu, Hualiang Jiang, Kaixian Chen. In silico site of metabolism prediction for human UGT-catalyzed reactions |
| 406 | -- | 413 | Matan Bodaker, Eran Meshorer, Eduardo Mitrani, Yoram Louzoun. Genes related to differentiation are correlated with the gene regulatory network structure |
| 414 | -- | 419 | Sebastian Dümcke, Johannes Bräuer, Benedict Anchang, Rainer Spang, Niko Beerenwinkel, Achim Tresch. Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction |
| 420 | -- | 427 | Violeta N. Kovacheva, Adnan Mujahid Khan, Michael Khan, David Bernard Alper Epstein, Nasir M. Rajpoot. DiSWOP: a novel measure for cell-level protein network analysis in localized proteomics image data |
| 428 | -- | 430 | Tiffany J. Morris, Lee M. Butcher, Andrew Feber, Andrew E. Teschendorff, Ankur R. Chakravarthy, Tomasz K. Wojdacz, Stephan Beck. ChAMP: 450k Chip Analysis Methylation Pipeline |
| 431 | -- | 433 | Bai Zhang, Xuchu Hou, Xiguo Yuan, Ie-Ming Shih, Zhen Zhang, Robert Clarke, Roger R. Wang, Yi Fu, Subha Madhavan, Yue Wang, Guoqiang Yu. AISAIC: a software suite for accurate identification of significant aberrations in cancers |
| 434 | -- | 436 | Guan-Zheng Luo, Wei Yang, Ying-Ke Ma, Xiu-Jie Wang. ISRNA: an integrative online toolkit for short reads from high-throughput sequencing data |
| 437 | -- | 438 | Esteban López-Camacho, María Jesús García-Godoy, Antonio J. Nebro, José Francisco Aldana Montes. jMetalCpp: optimizing molecular docking problems with a C++ metaheuristic framework |
| 439 | -- | 441 | Mohammad Mehdi Ghahremanpour, Seyed Shahriar Arab, Saman Biook Aghazadeh, Jin Zhang, David van der Spoel. MemBuilder: a web-based graphical interface to build heterogeneously mixed membrane bilayers for the GROMACS biomolecular simulation program |
| 442 | -- | 444 | Biao Li, Gao Wang, Suzanne M. Leal. PhenoMan: phenotypic data exploration, selection, management and quality control for association studies of rare and common variants |
| 445 | -- | 447 | Zeliha Görmez, Burcu Bakir-Gungor, Mahmut Samil Sagiroglu. HomSI: a homozygous stretch identifier from next-generation sequencing data |