Journal: Bioinformatics

Volume 30, Issue 6

748 -- 752Gong-Hua Li, Jing-Fei Huang. Inferring therapeutic targets from heterogeneous data: HKDC1 is a novel potential therapeutic target for cancer
753 -- 760Chandler Zuo, Sündüz Keles. A statistical framework for power calculations in ChIP-seq experiments
761 -- 767Jung-Hsien Chiang, Chan-Hsien Lin. NCS: incorporating positioning data to quantify nucleosome stability in yeast
768 -- 774Carson Holt, Bojan Losic, Deepa Pai, Zhen Zhao, Quang Trinh, Sujata Syam, Niloofar Arshadi, Gun Ho Jang, Johar Ali, Tim Beck, John McPherson, Lakshmi B. Muthuswamy. WaveCNV: allele-specific copy number alterations in primary tumors and xenograft models from next-generation sequencing
775 -- 783Zizhen Yao, Kyle L. MacQuarrie, Abraham P. Fong, Stephen J. Tapscott, Walter L. Ruzzo, Robert Gentleman. Discriminative motif analysis of high-throughput dataset
784 -- 791Frédéric Guyon, Pierre Tufféry. Fast protein fragment similarity scoring using a Binet-Cauchy kernel
792 -- 800Lydia Benkaidali, François André, Boubekeur Maouche, Pridi Siregar, Mohamed Benyettou, François Maurel, Michel Petitjean. Computing cavities, channels, pores and pockets in proteins from non-spherical ligands models
801 -- 807Yufei Xiao, Tzu-Hung Hsiao, Uthra Suresh, Hung-I Harry Chen, Xiaowu Wu, Steven E. Wolf, Yidong Chen. A novel significance score for gene selection and ranking
808 -- 814Pengyi Yang, Ellis Patrick, Shi-Xiong Tan, Daniel J. Fazakerley, James G. Burchfield, Christopher Gribben, Matthew J. Prior, David E. James, Yee Hwa Yang. Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway
815 -- 822Koichiro Doi, Taku Monjo, Pham H. Hoang, Jun Yoshimura, Hideaki Yurino, Jun Mitsui, Hiroyuki Ishiura, Yuji Takahashi, Yaeko Ichikawa, Jun Goto, Shoji Tsuji, Shinichi Morishita. Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing
823 -- 830Pengzhan Hu, Zhongchao Shen, Haibo Tu, Li Zhang, Tieliu Shi. Integrating multiple resources to identify specific transcriptional cooperativity with a Bayesian approach
831 -- 837Tanya P. Garcia, Samuel Müller, Raymond J. Carroll, Rosemary L. Walzem. Identification of important regressor groups, subgroups and individuals via regularization methods: application to gut microbiome data
838 -- 845José A. Seoane, Ian N. M. Day, Tom R. Gaunt, Colin Campbell. A pathway-based data integration framework for prediction of disease progression
846 -- 851Ivan Dimitrov, Lyudmila Naneva, Irini A. Doytchinova, Ivan Bangov. AllergenFP: allergenicity prediction by descriptor fingerprints
852 -- 859Xiangtian Yu, Guojun Li, Luonan Chen. Prediction and early diagnosis of complex diseases by edge-network
860 -- 867Senol Isci, Haluk Dogan, Cengizhan Ozturk, Hasan H. Otu. Bayesian network prior: network analysis of biological data using external knowledge
868 -- 875Sampo Pyysalo, Sophia Ananiadou. Anatomical entity mention recognition at literature scale
876 -- 883Samuel Croset, John P. Overington, Dietrich Rebholz-Schuhmann. The functional therapeutic chemical classification system
884 -- 886Ulrich Omasits, Christian H. Ahrens, Sebastian Müller, Bernd Wollscheid. Protter: interactive protein feature visualization and integration with experimental proteomic data
887 -- 888Sutharzan Sreeskandarajan, Michelle M. Flowers, John E. Karro, Chun Liang. A MATLAB-based tool for accurate detection of perfect overlapping and nested inverted repeats in DNA sequences
889 -- 890Anton A. Polyansky, Anton O. Chugunov, Pavel E. Volynsky, Nikolay A. Krylov, Dmitry E. Nolde, Roman G. Efremov. PREDDIMER: a web server for prediction of transmembrane helical dimers
891 -- 892Xavier Rogé, Xuegong Zhang. RNAseqViewer: visualization tool for RNA-Seq data
893 -- 895Joram M. Posma, Steven L. Robinette, Elaine Holmes, Jeremy K. Nicholson. MetaboNetworks, an interactive Matlab-based toolbox for creating, customizing and exploring sub-networks from KEGG
896 -- 898Daniel Jaeger, Johannes Barth, Anna Niehues, Christian Fufezan. pyGCluster, a novel hierarchical clustering approach