| 2241 | -- | 2251 | Saakshi Jalali, Shruti Kapoor, Ambily Sivadas, Deeksha Bhartiya, Vinod Scaria. Computational approaches towards understanding human long non-coding RNA biology |
| 2252 | -- | 2256 | João Miguel Freire, Susana Almeida Dias, Luís Flores, Ana Salomé Veiga, Miguel A. R. B. Castanho. Mining viral proteins for antimicrobial and cell-penetrating drug delivery peptides |
| 2257 | -- | 2261 | Federico Abascal, Michael L. Tress, Alfonso Valencia. Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2α and ZNF451 in mammals |
| 2262 | -- | 2268 | Liran Juan, Yongzhuang Liu, Yongtian Wang, Mingxiang Teng, Tianyi Zang, Yadong Wang. Family genome browser: visualizing genomes with pedigree information |
| 2269 | -- | 2275 | Michael B. Sohn, Ruofei Du, Lingling An. A robust approach for identifying differentially abundant features in metagenomic samples |
| 2276 | -- | 2283 | Fábio Madeira, Michele Tinti, Gavuthami Murugesan, Emily Berrett, Margaret Stafford, Rachel Toth, Christian Cole, Carol MacKintosh, Geoffrey J. Barton. 14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides |
| 2284 | -- | 2293 | Nicolas Palopoli, Kieren T. Lythgow, Richard J. Edwards. QSLiMFinder: improved short linear motif prediction using specific query protein data |
| 2294 | -- | 2302 | Mohamed Raef Smaoui, Henri Orland, Jérôme Waldispühl. Probing the binding affinity of amyloids to reduce toxicity of oligomers in diabetes |
| 2303 | -- | 2309 | Isaac Dialsingh, Stefanie R. Austin, Naomi S. Altman. Estimating the proportion of true null hypotheses when the statistics are discrete |
| 2310 | -- | 2317 | Andreas Gleiss, Mohammed Dakna, Harald Mischak, Georg Heinze. Two-group comparisons of zero-inflated intensity values: the choice of test statistic matters |
| 2318 | -- | 2323 | Prasad Patil, Pierre-Olivier Bachant-Winner, Benjamin Haibe-Kains, Jeffrey T. Leek. Test set bias affects reproducibility of gene signatures |
| 2324 | -- | 2331 | Cheng Zhang, Boyang Ji, Adil Mardinoglu, Jens Nielsen, Qiang Hua. Logical transformation of genome-scale metabolic models for gene level applications and analysis |
| 2332 | -- | 2339 | Dimitrios Kleftogiannis, Limsoon Wong, John A. C. Archer, Panos Kalnis. Hi-Jack: a novel computational framework for pathway-based inference of host-pathogen interactions |
| 2340 | -- | 2347 | Simon Tanaka, David Sichau, Dagmar Iber. LBIBCell: a cell-based simulation environment for morphogenetic problems |
| 2348 | -- | 2355 | Cheng Liang, Yue Li, Jiawei Luo, Zhaolei Zhang. A novel motif-discovery algorithm to identify co-regulatory motifs in large transcription factor and microRNA co-regulatory networks in human |
| 2356 | -- | 2363 | Ferhat Alkan, Cesim Erten. SiPAN: simultaneous prediction and alignment of protein-protein interaction networks |
| 2364 | -- | 2370 | Luís Pedro Coelho, Catarina Pato, Ana Friães, Ariane Neumann, Maren von Köckritz-Blickwede, Mário Ramirez, João André Carriço. Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images |
| 2371 | -- | 2373 | Owen J. L. Rackham, Petros Dellaportas, Enrico Petretto, Leonardo Bottolo. WGBSSuite: simulating whole-genome bisulphite sequencing data and benchmarking differential DNA methylation analysis tools |
| 2374 | -- | 2376 | Martin Hunt, Astrid Gall, Swee Hoe Ong, Jacqui Brener, Bridget Ferns, Philip J. R. Goulder, Eleni Nastouli, Jacqueline A. Keane, Paul Kellam, Thomas D. Otto. de novo assembly of RNA virus genomes |
| 2377 | -- | 2379 | Matthew A. Field, Vicky Cho, Matthew C. Cook, Anselm Enders, Carola G. Vinuesa, Belinda Whittle, T. Daniel Andrews, Chris C. Goodnow. Reducing the search space for causal genetic variants with VASP |
| 2380 | -- | 2381 | S. Capomaccio, M. Milanesi, L. Bomba, E. Vajana, P. Ajmone-Marsan. MUGBAS: a species free gene-based programme suite for post-GWAS analysis |
| 2382 | -- | 2383 | Guangchuang Yu, Li-Gen Wang, Qing-Yu He. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization |
| 2384 | -- | 2387 | Sung-Hwan Kim, Onyeka Ezenwoye, Hwan-Gue Cho, Keith D. Robertson, Jeong-Hyeon Choi. iTagPlot: an accurate computation and interactive drawing tool for tag density plot |
| 2388 | -- | 2390 | Kristen Marciniuk, Brett Trost, Scott Napper. EpIC: a rational pipeline for epitope immunogenicity characterization |
| 2391 | -- | 2393 | Daniel Money, Simon Whelan. GeLL: a generalized likelihood library for phylogenetic models |
| 2394 | -- | 2396 | Prakash Chandra Rathi, Daniel Mulnaes, Holger Gohlke. VisualCNA: a GUI for interactive constraint network analysis and protein engineering for improving thermostability |
| 2397 | -- | 2399 | Miguel Vazquez, Alfonso Valencia, Tirso Pons. Structure-PPi: a module for the annotation of cancer-related single-nucleotide variants at protein-protein interfaces |
| 2400 | -- | 2402 | Yarden Katz, Eric T. Wang, Jacob Silterra, Schraga Schwartz, Bang Wong, Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov, Edoardo M. Airoldi, Christopher B. Burge. Quantitative visualization of alternative exon expression from RNA-seq data |
| 2403 | -- | 2405 | Anindya Bhattacharya, Yan Cui. miR2GO: comparative functional analysis for microRNAs |
| 2406 | -- | 2408 | Martin Robinson, Steven S. Andrews, Radek Erban. Multiscale reaction-diffusion simulations with Smoldyn |
| 2409 | -- | 2411 | V. Vijayan, Vikram Saraph, Tijana Milenkovic. MAGNA++: Maximizing Accuracy in Global Network Alignment via both node and edge conservation |
| 2412 | -- | 2414 | Xu Shi, Robert O. Barnes, Li Chen, Ayesha N. Shajahan-Haq, Leena Hilakivi-Clarke, Robert Clarke, Yue Wang, Jianhua Xuan. BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method |
| 2415 | -- | 2417 | Hannes L. Röst, George Rosenberger, Ruedi Aebersold, Lars Malmström. Efficient visualization of high-throughput targeted proteomics experiments: TAPIR |
| 2418 | -- | 2420 | Kyle D. Bemis, April Harry, Livia S. Eberlin, Christina Ferreira, Stephanie M. van de Ven, Parag Mallick, Mark L. Stolowitz, Olga Vitek. Cardinal: an R package for statistical analysis of mass spectrometry-based imaging experiments |