| 3561 | -- | 3568 | Runjun D. Kumar, Adam C. Searleman, S. Joshua Swamidass, Obi L. Griffith, Ron Bose. Statistically identifying tumor suppressors and oncogenes from pan-cancer genome-sequencing data |
| 3569 | -- | 3576 | Adam M. Novak, Yohei Rosen, David Haussler, Benedict Paten. Canonical, stable, general mapping using context schemes |
| 3577 | -- | 3583 | Na Zhu, Verena Heinrich, Thorsten Dickhaus, Jochen Hecht, Peter N. Robinson, Stefan Mundlos, Tom Kamphans, Peter Krawitz. Strategies to improve the performance of rare variant association studies by optimizing the selection of controls |
| 3584 | -- | 3592 | Karel Brinda, Maciej Sykulski, Gregory Kucherov. k-mer-based metagenomic classification |
| 3593 | -- | 3599 | Ying Jin, Oliver H. Tam, Eric Paniagua, Molly Hammell. TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets |
| 3600 | -- | 3607 | Pavel P. Kuksa, Martin Renqiang Min, Rishabh Dugar, Mark Gerstein. High-order neural networks and kernel methods for peptide-MHC binding prediction |
| 3608 | -- | 3616 | Rajdeep Kaur Grewal, Devrani Mitra, Soumen Roy. Mapping networks of light-dark transition in LOV photoreceptors |
| 3617 | -- | 3624 | Daniel Trejo-Baños, Andrew J. Millar, Guido Sanguinetti. A Bayesian approach for structure learning in oscillating regulatory networks |
| 3625 | -- | 3630 | Marek Gierlinski, Christian Cole, Pietà Schofield, Nicholas J. Schurch, Alexander Sherstnev, Vijender Singh, Nicola Wrobel, Karim Gharbi, Gordon Simpson, Tom Owen-Hughes, Mark L. Blaxter, Geoffrey J. Barton. Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment |
| 3631 | -- | 3637 | Camille Stephan-Otto Attolini, Víctor Peña, David Rossell. Designing alternative splicing RNA-seq studies. Beyond generic guidelines |
| 3638 | -- | 3644 | Yingli Lv, Shuyuan Wang, Fanlin Meng, Lei Yang, Zhifeng Wang, Jing Wang, Xiaowen Chen, Wei Jiang, Yixue Li, Xia Li. Identifying novel associations between small molecules and miRNAs based on integrated molecular networks |
| 3645 | -- | 3652 | Gengbo Chen, Liang Cui, Guo Shou Teo, Choon Nam Ong, Chuen Seng Tan, Hyungwon Choi. MetTailor: dynamic block summary and intensity normalization for robust analysis of mass spectrometry data in metabolomics |
| 3653 | -- | 3659 | SungChul Kim, Lee Sael, Hwanjo Yu. k patient search exploiting Gene-Ontology and orthogonal non-negative matrix factorization |
| 3660 | -- | 3665 | Roger A. Morbey, Alex J. Elliot, Andre Charlett, Neville Q. Verlander, Nick Andrews, Gillian E. Smith. The application of a novel 'rising activity, multi-level mixed effects, indicator emphasis' (RAMMIE) method for syndromic surveillance in England |
| 3666 | -- | 3672 | Mumtahena Rahman, Laurie K. Jackson, W. Evan Johnson, Dean Y. Li, Andrea H. Bild, Stephen R. Piccolo. Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results |
| 3673 | -- | 3675 | Julian Gehring, Bernd Fischer 0003, Michael F. Lawrence, Wolfgang Huber. SomaticSignatures: inferring mutational signatures from single-nucleotide variants |
| 3676 | -- | 3678 | Honglei Liu, Zheng Wei, Antonia Dominguez, Yanda Li, Xiaowo Wang, Lei S. Qi. CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activation |
| 3679 | -- | 3681 | Arnaud Ceol, Heiko Müller. The MI bundle: enabling network and structural biology in genome visualization tools |
| 3682 | -- | 3684 | Christopher E. Gillies, Catherine C. Robertson, Matthew G. Sampson, Hyun Min Kang. GeneVetter: a web tool for quantitative monogenic assessment of rare diseases |
| 3685 | -- | 3687 | Wei-Hien Cheong, Yung-Chie Tan, Soon-Joo Yap, Kee-Peng Ng. ClicO FS: an interactive web-based service of Circos |
| 3688 | -- | 3690 | Courtney E. Lane, Daniel Hulgan, Kelly O'Quinn, Michael G. Benton. CEMAsuite: open source degenerate PCR primer design |
| 3691 | -- | 3693 | Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. Keane, Julian Parkhill. Roary: rapid large-scale prokaryote pan genome analysis |
| 3694 | -- | 3696 | Heng Li. FermiKit: assembly-based variant calling for Illumina resequencing data |
| 3697 | -- | 3699 | Elias D. López, Juan Pablo Arcon, Diego F. Gauto, Ariel A. Petruk, Carlos P. Modenutti, Victoria G. Dumas, Marcelo A. Marti, Adrian Gustavo Turjanski. WATCLUST: a tool for improving the design of drugs based on protein-water interactions |
| 3700 | -- | 3702 | Chengcheng Liu, Ju Xin Chin, Dong-Yup Lee. SynLinker: an integrated system for designing linkers and synthetic fusion proteins |
| 3703 | -- | 3705 | Paula Helena Reyes-Herrera, C. A. Speck-Hernandez, C. A. Sierra, S. Herrera. BackCLIP: a tool to identify common background presence in PAR-CLIP datasets |
| 3706 | -- | 3708 | Biao Li, Gao T. Wang, Suzanne M. Leal. Generation of sequence-based data for pedigree-segregating Mendelian or Complex traits |
| 3709 | -- | 3711 | Chase W. Nelson, Louise H. Moncla, Austin L. Hughes. SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data |
| 3712 | -- | 3714 | Varun Giri, Tadi Venkata Sivakumar, Kwang Myung Cho, Tae-Yong Kim, Anirban Bhaduri. RxnSim: a tool to compare biochemical reactions |
| 3715 | -- | 3717 | Bugra Ozer, Mahmut Samil Sagiroglu, Hüseyin Demirci. GeneCOST: a novel scoring-based prioritization framework for identifying disease causing genes |
| 3718 | -- | 3720 | Tal Galili. dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering |