| 981 | -- | 985 | Takahiro Tsukui, Nozomi Nagano, Myco Umemura, Toshitaka Kumagai, Goro Terai, Masayuki Machida, Kiyoshi Asai. Ustilaginoidea virens |
| 986 | -- | 990 | Peter Keane, Rhodri Ceredig, Cathal Seoighe. Promiscuous mRNA splicing under the control of AIRE in medullary thymic epithelial cells |
| 991 | -- | 998 | Graham Jones, Zeynep Aydin, Bengt Oxelman. DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent |
| 999 | -- | 1006 | David T. Jones, Tanya Singh, Tomasz Kosciolek, Stuart J. Tetchner. MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins |
| 1007 | -- | 1015 | Sophie Van der Sluis, Conor V. Dolan, Jiang Li, You-Qiang Song, Pak Chung Sham, Danielle Posthuma, Miao-Xin Li. MGAS: a powerful tool for multivariate gene-based genome-wide association analysis |
| 1016 | -- | 1024 | Dante A. Pertusi, Andrew E. Stine, Linda J. Broadbelt, Keith E. J. Tyo. Efficient searching and annotation of metabolic networks using chemical similarity |
| 1025 | -- | 1033 | Rachita Ramachandra Halehalli, Hampapathalu Adimurthy Nagarajaram. Molecular principles of human virus protein-protein interactions |
| 1034 | -- | 1043 | Minji Kim, Farzad Farnoud, Olgica Milenkovic. HyDRA: gene prioritization via hybrid distance-score rank aggregation |
| 1044 | -- | 1052 | Koji Kyoda, Yukako Tohsato, Kenneth H. L. Ho, Shuichi Onami. Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data |
| 1053 | -- | 1059 | Jennifer E. Dent, Valentina Devescovi, Han Li, Pietro di Lena, Youtao Lu, Yuanhua Liu, Christine Nardini. Mechanotransduction map: simulation model, molecular pathway, gene set |
| 1060 | -- | 1066 | Haifen Chen, Jing Guo, Shital K. Mishra, Paul Robson, Mahesan Niranjan, Jie Zheng. Single-cell transcriptional analysis to uncover regulatory circuits driving cell fate decisions in early mouse development |
| 1067 | -- | 1074 | Zhenqiu Liu, Fengzhu Sun, Jonathan Braun, Dermot P. B. McGovern, Steven T. Piantadosi. Multilevel regularized regression for simultaneous taxa selection and network construction with metagenomic count data |
| 1075 | -- | 1083 | Oyebode J. Oyeyemi, Oluwafemi Davies, David L. Robertson, Jean-Marc Schwartz. A logical model of HIV-1 interactions with the T-cell activation signalling pathway |
| 1084 | -- | 1092 | Douwe Kiela, Yufan Guo, Ulla Stenius, Anna Korhonen. Unsupervised discovery of information structure in biomedical documents |
| 1093 | -- | 1101 | Christopher Y. Park, Arjun Krishnan, Qian Zhu, Aaron K. Wong, Young-Suk Lee, Olga G. Troyanskaya. Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms |
| 1102 | -- | 1110 | Meng-Hsiun Tsai, Mu-Yen Chen, Steve G. Huang, Yao-Ching Hung, Hsin-Chieh Wang. A bio-inspired computing model for ovarian carcinoma classification and oncogene detection |
| 1111 | -- | 1119 | Ying-Ying Xu, Fan Yang, Yang Zhang, Hong-bin Shen. Bioimaging-based detection of mislocalized proteins in human cancers by semi-supervised learning |
| 1120 | -- | 1123 | Yuki Naito, Kimihiro Hino, Hidemasa Bono, Kumiko Ui-Tei. CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites |
| 1124 | -- | 1126 | Sara J. C. Gosline, Coyin Oh, Ernest Fraenkel. SAMNetWeb: identifying condition-specific networks linking signaling and transcription |
| 1127 | -- | 1129 | Altuna Akalin, Vedran Franke, Kristian Vlahovicek, Christopher E. Mason, Dirk Schübeler. genomation: a toolkit to summarize, annotate and visualize genomic intervals |
| 1130 | -- | 1132 | Dimos Gaidatzis, Anita Lerch, Florian Hahne, Michael B. Stadler. QuasR: quantification and annotation of short reads in R |
| 1133 | -- | 1135 | Karen E. van Rens, Veli Mäkinen, Alexandru I. Tomescu. SNV-PPILP: refined SNV calling for tumor data using perfect phylogenies and ILP |
| 1136 | -- | 1137 | Matthew K. Matlock, Tyler B. Hughes, Sanjay Joshua Swamidass. XenoSite server: a web-available site of metabolism prediction tool |
| 1138 | -- | 1140 | Layla Hirsh, Damiano Piovesan, Manuel Giollo, Carlo Ferrari, Silvio C. E. Tosatto. The Victor C++ library for protein representation and advanced manipulation |
| 1141 | -- | 1143 | Damian Fermin, Dmitry Avtonomov, Hyungwon Choi, Alexey I. Nesvizhskii. LuciPHOr2: site localization of generic post-translational modifications from tandem mass spectrometry data |
| 1144 | -- | 1146 | Axel Poulet, Ignacio Arganda-Carreras, David Legland, Aline V. Probst, Philippe Andrey, Christophe Tatout. NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei |
| 1147 | -- | 1149 | Jonathan C. Fuller, Michael Martinez, Stefan Henrich, Antonia Stank, Stefan Richter 0002, Rebecca C. Wade. LigDig: a web server for querying ligand-protein interactions |
| 1150 | -- | 1153 | Zeeshan Ahmed, Michel Mayr, Saman Zeeshan, Thomas Dandekar, Martin J. Mueller, Agnes Fekete. Lipid-Pro: a computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms |
| 1154 | -- | 1159 | Aurélien Naldi, Pedro T. Monteiro, Christoph Müssel, Hans A. Kestler, Denis Thieffry, Ioannis Xenarios, Julio Saez-Rodriguez, Tomás Helikar, Claudine Chaouiya. Cooperative development of logical modelling standards and tools with CoLoMoTo |
| 1160 | -- | 0 | A. Ercument Cicek, Kathryn Roeder, Gultekin Özsoyoglu. MIRA: mutual information-based reporter algorithm for metabolic networks |