| 1 | -- | 7 | Wei Yang, Saurabh Sinha. A novel method for predicting activity of cis-regulatory modules, based on a diverse training set |
| 8 | -- | 16 | Rafael Rosales, Rodrigo D. Drummond, Renan Valieris, Emmanuel Dias-Neto, Israel T. da Silva. signeR: an empirical Bayesian approach to mutational signature discovery |
| 17 | -- | 25 | Sandra L. Taylor, L. Renee Ruhaak, Robert H. Weiss, Karen Kelly, Kyoungmi Kim. Multivariate two-part statistics for analysis of correlated mass spectrometry data from multiple biological specimens |
| 26 | -- | 34 | Can Kockan, Faraz Hach, Iman Sarrafi, Robert H. Bell, Brian McConeghy, Kevin Beja, Anne Haegert, Alexander W. Wyatt, Stanislav Volik, Kim N. Chi, Colin Collins, Süleyman Cenk Sahinalp. SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA |
| 35 | -- | 41 | Bin Liu 0014, Shanyi Wang, Ren Long, Kuo-Chen Chou. iRSpot-EL: identify recombination spots with an ensemble learning approach |
| 42 | -- | 48 | Akinori Awazu. Prediction of nucleosome positioning by the incorporation of frequencies and distributions of three different nucleotide segment lengths into a general pseudo k-tuple nucleotide composition |
| 49 | -- | 55 | Matei David, L. J. Dursi, Delia Yao, Paul C. Boutros, Jared T. Simpson. Nanocall: an open source basecaller for Oxford Nanopore sequencing data |
| 56 | -- | 63 | Lazaros Mavridis, Robert W. Janes. PDB2CD: a web-based application for the generation of circular dichroism spectra from protein atomic coordinates |
| 64 | -- | 71 | Il-Youp Kwak, Wei Pan. Gene- and pathway-based association tests for multiple traits with GWAS summary statistics |
| 72 | -- | 78 | Verena Heinrich, Tom Kamphans, Stefan Mundlos, Peter N. Robinson, Peter M. Krawitz. A likelihood ratio-based method to predict exact pedigrees for complex families from next-generation sequencing data |
| 79 | -- | 86 | Jie Zheng, Santiago Rodríguez, Charles Laurin, Denis Baird, Lea Trela-Larsen, Mesut A. Erzurumluoglu, Yi Zheng, Jon White, Claudia Giambartolomei, Delilah Zabaneh, Richard Morris, Meena Kumari, Juan P. Casas, Aroon D. Hingorani, David M. Evans, Tom R. Gaunt, Ian N. M. Day. HAPRAP: a haplotype-based iterative method for statistical fine mapping using GWAS summary statistics |
| 87 | -- | 94 | Minsuk Kim, Gwanggyu Sun, Dong-Yup Lee, Byung-Gee Kim. BeReTa: a systematic method for identifying target transcriptional regulators to enhance microbial production of chemicals |
| 95 | -- | 103 | Igor Marin de Mas, Eric Fanchon, Balázs Papp, Susana G. Kalko, Josep Roca, Marta Cascante. Molecular mechanisms underlying COPD-muscle dysfunction unveiled through a systems medicine approach |
| 104 | -- | 111 | Victor Jaravine, Silke Raffegerst, Dolores J. Schendel, Dmitrij Frishman. Assessment of cancer and virus antigens for cross-reactivity in human tissues |
| 112 | -- | 118 | Xiaowei Chen, Yajing Hao, Ya Cui, Zhen Fan, Shunmin He, Jianjun Luo, Runsheng Chen. LncVar: a database of genetic variation associated with long non-coding genes |
| 119 | -- | 121 | Anuj Gupta, I. King Jordan, Lavanya Rishishwar. stringMLST: a fast k-mer based tool for multilocus sequence typing |
| 122 | -- | 124 | Yongchun Zuo, Yuan Li, Yingli Chen, Guangpeng Li, Zhenhe Yan, Lei Yang. PseKRAAC: a flexible web server for generating pseudo K-tuple reduced amino acids composition |
| 125 | -- | 127 | M. Stanley Fujimoto, Anton Suvorov, Nicholas O. Jensen, Mark J. Clement, Quinn Snell, Seth M. Bybee. The OGCleaner: filtering false-positive homology clusters |
| 128 | -- | 129 | Marta Nascimento, Adriano Sousa, Mário Ramirez, Alexandre P. Francisco, João A. Carriço, Cátia Vaz. PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods |
| 130 | -- | 132 | Michael R. McKain, Ryan H. Hartsock, Molly M. Wohl, Elizabeth A. Kellogg. Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes |
| 133 | -- | 134 | Sébastien Buchoux. FATSLiM: a fast and robust software to analyze MD simulations of membranes |
| 135 | -- | 136 | Samuel Wieczorek, Florence Combes, Cosmin Lazar, Quentin Giai Gianetto, Laurent Gatto, Alexia Dorffer, Anne-Marie Hesse, Yohann Couté, Myriam Ferro, Christophe Bruley, Thomas Burger. DAPAR & ProStaR: software to perform statistical analyses in quantitative discovery proteomics |
| 137 | -- | 138 | Ilias Georgakopoulos-Soares, Naman Jain, Jesse M. Gray, Martin Hemberg. MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments |
| 139 | -- | 141 | Yi Zhong, Theofanis Karaletsos, Philipp Drewe, Vipin T. Sreedharan, David Kuo, Kamini Singh, Hans-Guido Wendel, Gunnar Rätsch. RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints |
| 142 | -- | 144 | Rudy Arthur, Ole Schulz-Trieglaff, Anthony J. Cox, Jared O'Connell. AKT: ancestry and kinship toolkit |
| 145 | -- | 147 | Takaya Saito, Marc Rehmsmeier. Precrec: fast and accurate precision-recall and ROC curve calculations in R |
| 148 | -- | 149 | Carlo Ravagli, Francois Pognan, Philippe Marc. OntoBrowser: a collaborative tool for curation of ontologies by subject matter experts |
| 150 | -- | 0 | Charlotte Siska, Russell Bowler, Katerina Kechris. The discordant method: a novel approach for differential correlation |