| 331 | -- | 338 | William H. Majoros, Young-Sook Kim, Alejandro Barrera, Fan Li, Xingyan Wang, Sarah J. Cunningham, Graham D. Johnson, Cong Guo, William L. Lowe, Denise M. Scholtens, M. Geoffrey Hayes, Timothy E. Reddy, Andrew S. Allen. Bayesian estimation of genetic regulatory effects in high-throughput reporter assays |
| 339 | -- | 346 | Ran Su, Jiahang Zhang, Xiaofeng Liu 0004, Leyi Wei. Identification of expression signatures for non-small-cell lung carcinoma subtype classification |
| 347 | -- | 355 | Chan Wang, Jiyuan Hu, Martin J. Blaser, Huilin Li. Estimating and testing the microbial causal mediation effect with high-dimensional and compositional microbiome data |
| 356 | -- | 363 | Terry Ma, Di Xiao, Xin-xing. MetaBMF: a scalable binning algorithm for large-scale reference-free metagenomic studies |
| 364 | -- | 372 | Sierra S. Nishizaki, Natalie Ng, Shengcheng Dong, Robert S. Porter, Cody Morterud, Colten Williams, Courtney Asman, Jessica A Switzenberg, Alan P. Boyle. Predicting the effects of SNPs on transcription factor binding affinity |
| 373 | -- | 379 | Patrick Sorn, Christoph Holtsträter, Martin Löwer, Ugur Sahin, David Weber. ArtiFuse - computational validation of fusion gene detection tools without relying on simulated reads |
| 380 | -- | 387 | Alfredo Velasco II, Benjamin T. James, Vincent D. Wells, Hani Z. Girgis. Look4TRs: a de novo tool for detecting simple tandem repeats using self-supervised hidden Markov models |
| 388 | -- | 392 | Cong Pian, Guang-Le Zhang, Fei Li, Xiaodan Fan. MM-6mAPred: identifying DNA N6-methyladenine sites based on Markov model |
| 393 | -- | 399 | Michele Berselli, Enrico Lavezzo, Stefano Toppo. QPARSE: searching for long-looped or multimeric G-quadruplexes potentially distinctive and druggable |
| 400 | -- | 407 | Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin. Haplotype-aware graph indexes |
| 408 | -- | 415 | Martin C. Frith. How sequence alignment scores correspond to probability models |
| 416 | -- | 421 | Chloé Dimeglio, Stéphanie Raymond, Nicolas Jeanne, Christelle Reynès, Romain Carcenac, Caroline Lefebvre, Michelle Cazabat, Florence Nicot, Pierre Delobel, Jacques Izopet. THETA: a new genotypic approach for predicting HIV-1 CRF02-AG coreceptor usage |
| 422 | -- | 429 | Maxat Kulmanov, Robert Hoehndorf. DeepGOPlus: improved protein function prediction from sequence |
| 430 | -- | 436 | Roberto Del Amparo, Alberto Vicens, Miguel Arenas. The influence of heterogeneous codon frequencies along sequences on the estimation of molecular adaptation |
| 437 | -- | 448 | Di Wang, Ling Geng, Yu-Jun Zhao, Yang Yang 0030, Yan Huang, Yang Zhang, Hong-bin Shen. Artificial intelligence-based multi-objective optimization protocol for protein structure refinement |
| 449 | -- | 461 | Justin Chan, Jinhao Zou, Christopher Llynard Ortiz, Chi-Hong Chang Chien, Rong-Long Pan, Lee-Wei Yang. DR-SIP: protocols for higher order structure modeling with distance restraints- and cyclic symmetry-imposed packing |
| 462 | -- | 469 | Gregor Entzian, Martin Raden. pourRNA - a time- and memory-efficient approach for the guided exploration of RNA energy landscapes |
| 470 | -- | 477 | Badri Adhikari. DEEPCON: protein contact prediction using dilated convolutional neural networks with dropout |
| 478 | -- | 486 | Zeyu Wen, Jiahua He, Sheng-You Huang. Topology-independent and global protein structure alignment through an FFT-based algorithm |
| 487 | -- | 495 | Adib Shafi, Tin Nguyen 0001, Azam Peyvandi-Pour, Sorin Draghici. GSMA: an approach to identify robust global and test Gene Signatures using Meta-Analysis |
| 496 | -- | 503 | Wanwen Zeng, Yong Wang, Rui Jiang 0001. Integrating distal and proximal information to predict gene expression via a densely connected convolutional neural network |
| 504 | -- | 513 | Christelle Reynès, Guilhem Kister, Marine Rohmer, Tristan Bouschet, Annie Varrault, Emeric Dubois, Stéphanie Rialle, Laurent Journot, Robert Sabatier. ISoLDE: a data-driven statistical method for the inference of allelic imbalance in datasets with reciprocal crosses |
| 514 | -- | 523 | Taneli Pusa, Mariana Galvao Ferrarini, Ricardo Andrade, Arnaud Mary, Alberto Marchetti-Spaccamela, Leen Stougie, Marie-France Sagot. MOOMIN - Mathematical explOration of 'Omics data on a MetabolIc Network |
| 524 | -- | 532 | Zhiguang Huo, Shaowu Tang, Yongseok Park, George C. Tseng. P-value evaluation, variability index and biomarker categorization for adaptively weighted Fisher's meta-analysis method in omics applications |
| 533 | -- | 538 | Feiyang Ma, Matteo Pellegrini. ACTINN: automated identification of cell types in single cell RNA sequencing |
| 539 | -- | 545 | Li Chen, Feng Wang, Emily C. Bruggeman, Chao Li, Bing Yao. circMeta: a unified computational framework for genomic feature annotation and differential expression analysis of circular RNAs |
| 546 | -- | 551 | Kyungsoo Kim, Sunmo Yang, Sang-Jun Ha, Insuk Lee. VirtualCytometry: a webserver for evaluating immune cell differentiation using single-cell RNA sequencing data |
| 552 | -- | 557 | Lerato E. Magosi, Anuj Goel, Jemma C. Hopewell. Identifying small-effect genetic associations overlooked by the conventional fixed-effect model in a large-scale meta-analysis of coronary artery disease |
| 558 | -- | 567 | Mikel Hernaez, Charles Blatti, Olivier Gevaert. Comparison of single and module-based methods for modeling gene regulatory networks |
| 568 | -- | 577 | Jiajie Peng, Junya Lu, Donghee Hoh, Ayesha S. Dina, Xuequn Shang, David M. Kramer 0001, Jin Chen. Identifying emerging phenomenon in long temporal phenotyping experiments |
| 578 | -- | 585 | Ning Shi, Zexuan Zhu, Ke Tang, David Parker, Shan He 0001. ATEN: And/Or tree ensemble for inferring accurate Boolean network topology and dynamics |
| 586 | -- | 593 | Boseung Choi, Yu-Yu Cheng, Selahattin Cinar, William Ott, Matthew R. Bennett, Kresimir Josic, Jae Kyoung Kim. Bayesian inference of distributed time delay in transcriptional and translational regulation |
| 594 | -- | 602 | Leonard Schmiester, Yannik Schälte, Fabian Fröhlich, Jan Hasenauer, Daniel Weindl. Efficient parameterization of large-scale dynamic models based on relative measurements |
| 603 | -- | 610 | Sameh K. Mohamed, Vít Novácek, Aayah Nounu. Discovering protein drug targets using knowledge graph embeddings |
| 611 | -- | 620 | Peiliang Lou, Antonio Jimeno-Yepes, Zai Zhang, Qinghua Zheng, Xiangrong Zhang, Chen Li 0032. BioNorm: deep learning-based event normalization for the curation of reaction databases |
| 621 | -- | 628 | Siva Rajesh Kasa, Sakyajit Bhattacharya, Vaibhav Rajan. Gaussian mixture copulas for high-dimensional clustering and dependency-based subtyping |
| 629 | -- | 636 | Sami Tabib, Denis Larocque. Non-parametric individual treatment effect estimation for survival data with random forests |
| 637 | -- | 643 | Shankai Yan, Ka Chun Wong. Context awareness and embedding for biomedical event extraction |
| 644 | -- | 646 | R. N. Ramirez, K. Bedirian, S. M. Gray, A Diallo. DNA Rchitect: an R based visualizer for network analysis of chromatin interaction data |
| 647 | -- | 648 | Grace Meng, Marva Tariq, Swati Jain, Shereef Elmetwaly, Tamar Schlick. RAG-Web: RNA structure prediction/design using RNA-As-Graphs |
| 649 | -- | 650 | Ramiro Magno, Ana-Teresa Maia. gwasrapidd: an R package to query, download and wrangle GWAS catalog data |
| 651 | -- | 0 | Antoine Limasset, Jean-Francois Flot, Pierre Peterlongo. Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs |