Journal: Bioinformatics

Volume 36, Issue 20

4977 -- 4983Jing-Bo Zhou, Yao Xiong, Ke An, Zhi-Qiang Ye, Yun-Dong Wu. IDRMutPred: predicting disease-associated germline nonsynonymous single nucleotide variants (nsSNVs) in intrinsically disordered regions
4984 -- 4990Prateek Gupta, Pankaj Singh Dholaniya, Sameera Devulapalli, Nilesh R. Tawari, Yellamaraju Sreelakshmi, Rameshwar Sharma. Reanalysis of genome sequences of tomato accessions and its wild relatives: development of Tomato Genomic Variation (TGV) database integrating SNPs and INDELs polymorphisms
4991 -- 4999Matej Lexa, Pavel Jedlicka, Ivan Vanat, Michal Cervenanský, Eduard Kejnovský. TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting
5000 -- 5006Lucile Broseus, Aubin Thomas, Andrew J. Oldfield, Dany Severac, Emeric Dubois, William Ritchie. TALC: Transcript-level Aware Long-read Correction
5007 -- 5013Martin R. Smith. Information theoretic generalized Robinson-Foulds metrics for comparing phylogenetic trees
5014 -- 5020Nina I Ilieva, Nicola Galvanetto, Michele Allegra, Marco Brucale, Alessandro Laio. Automatic classification of single-molecule force spectroscopy traces from heterogeneous samples
5021 -- 5026Gang Xu, Qinghua Wang, Jianpeng Ma. OPUS-TASS: a protein backbone torsion angles and secondary structure predictor based on ensemble neural networks
5027 -- 5036Mingzhou Song 0001, Hua Zhong. Efficient weighted univariate clustering maps outstanding dysregulated genomic zones in human cancers
5037 -- 5044Martin E. Guerrero-Gimenez, J. M. Fernandez-Muñoz, B. J. Lang, K. M. Holton, D. R. Ciocca, C. A. Catania, F. C. M. Zoppino. Galgo: a bi-objective evolutionary meta-heuristic identifies robust transcriptomic classifiers associated with patient outcome across multiple cancer types
5045 -- 5053Moritz Hess, Maren Hackenberg, Harald Binder. Exploring generative deep learning for omics data using log-linear models
5054 -- 5060Xiangyu Liu, Di Li, Juntao Liu, Zhengchang Su, Guojun Li. RecBic: a fast and accurate algorithm recognizing trend-preserving biclusters
5061 -- 5067Ali Akbar Jamali, Anthony J. Kusalik, Fang-Xiang Wu. MDIPA: a microRNA-drug interaction prediction approach based on non-negative matrix factorization
5068 -- 5075Yue Wu, Michael T. Judge, Jonathan Arnold, Suchendra M. Bhandarkar, Arthur Edison. RTExtract: time-series NMR spectra quantification based on 3D surface ridge tracking
5076 -- 5085Nikolay Russkikh, Denis V. Antonets, Dmitry Shtokalo, Alexander Makarov, Yuri Vyatkin, Alexey Zakharov, Evgeny Terentyev. Style transfer with variational autoencoders is a promising approach to RNA-Seq data harmonization and analysis
5086 -- 5092Antti Häkkinen, Juha Koiranen, Julia Casado, Katja Kaipio, Oskari Lehtonen, Eleonora Petrucci, Johanna Hynninen, Sakari Hietanen, Olli Carpén, Luca Pasquini, Mauro Biffoni, Rainer Lehtonen, Sampsa Hautaniemi. qSNE: quadratic rate t-SNE optimizer with automatic parameter tuning for large datasets
5093 -- 5103Mark Kittisopikul, Amir Vahabikashi, Takeshi Shimi, Robert D. Goldman, Khuloud Jaqaman. Adaptive multiorientation resolution analysis of complex filamentous network images
5104 -- 5106Kirill Zinovjev, Marc van der Kamp. Enlighten2: molecular dynamics simulations of protein-ligand systems made accessible
5107 -- 5108Francesco Ambrosetti, Tobias Hegelund Olsen, Pier Paolo Olimpieri, Brian Jiménez-García, Edoardo Milanetti, Paolo Marcatili, Alexandre M. J. J. Bonvin. proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking
5109 -- 5111Ren Kong, Guangbo Yang, Rui Xue, Ming Liu, Feng Wang, Jianping Hu, Xiaoqiang Guo, Shan Chang. COVID-19 Docking Server: a meta server for docking small molecules, peptides and antibodies against potential targets of COVID-19
5112 -- 5114Max Hebditch, Jim Warwicker. Protein-sol pKa: prediction of electrostatic frustration, with application to coronaviruses
5115 -- 5116August E. Woerner, Jennifer Churchill Cihlar, Utpal Smart, Bruce Budowle. Numt identification and removal with RtN!
5117 -- 5119Amel Bekkar, Anita Nasrallah, Nicolas Guex, Lluis Fajas, Ioannis Xenarios, Isabel C. Lopez-Mejia. PamgeneAnalyzeR: open and reproducible pipeline for kinase profiling
5120 -- 5121Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch. GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography
5122 -- 5123Christiana N. Fogg, Ron Shamir, Diane E. Kovats. Bonnie Berger named ISCB 2019 ISCB Accomplishments by a Senior Scientist Award recipient
5124 -- 5125Christiana N. Fogg, Ron Shamir, Diane E. Kovats. 2019 ISCB Overton Prize: Christophe Dessimoz
5126 -- 0Christiana N. Fogg, Ron Shamir, Diane E. Kovats. 2019 Outstanding Contributions to ISCB Awarded to Barb Bryant
5127 -- 5128Christiana N. Fogg, Ron Shamir, Diane E. Kovats. 2019 ISCB Innovator Award Recognizes William Stafford Noble