Journal: Journal of Computational Biology

Volume 1, Issue 4

255 -- 256. In Memoriam: Eugene L. Lawler
257 -- 270M. J. Miller, J. I. Powell. A Quantitative Comparison of DNA Sequence Assembly Programs
271 -- 292Kun-Mao Chao, Ross C. Hardison, Webb Miller. Recent Developments in Linear-Space Alignment Methods: A Survey
293 -- 296P. A. Rioux, W. A. Gilbert, Timothy G. Littlejohn. A Portable Search Engine and Browser for the Entrez DataBase
297 -- 310William R. Taylor. Motif-Biased Protein Sequence Alignment
311 -- 336Pierre Baldi, Yves Chauvin. Hidden Markov Models of the G-Protein-Coupled Receptor Family
337 -- 348Lusheng Wang, Tao Jiang. On the Complexity of Multiple Sequence Alignment
349 -- 0Dalit Naor, Douglas L. Brutlag. On Near-Optimal Alignments of Biological Sequences

Volume 1, Issue 3

173 -- 190Robert J. Robbins. Genome Informatics I: Community Databases
191 -- 198R. Knüppel, P. Dietze, W. Lehnberg, Kornelie Frech, Edgar Wingender. TRANSFAC Retrieval Program: A Network Model Database of Eukaryotic Transcription Regulating Sequences and Proteins
199 -- 215Winston Hide, John Burke, Daniel B. da Vison. 2, an Algorithm for High-Performance Sequence Comparison
217 -- 226Zheng Zhang 0004, Balaji Raghavachari, Ross C. Hardison, Webb Miller. Chaining Multiple-Alignment Blocks
227 -- 234Chi Wang. A Subgraph Problem from Restriction Maps of DNA
235 -- 239Zheng Zhang. An Exponential Example for a Partial Digest Mapping Algorithm
241 -- 253Daniela R. Martin. Equivalence Classes for the Double-Digest Problem with Coincident Cut Sites

Volume 1, Issue 2

93 -- 104Larry Goldstein, Michael S. Waterman. Approximations to Profile Score Distributions
105 -- 110Martin E. Dyer, Alan M. Frieze, Stephen Suen. The Probability of Unique Solutions of Sequencing by Hybridization
111 -- 119Gary A. Rohrer, D. W. Behrens, John W. Keele. A Simplified Procedure for Entry of Raw Genotypic Data
121 -- 132Mauro Rustici, Arthur M. Lesk. Three-Dimensional Searching for Recurrent Structural Motifs in Data Bases of Protein Structures
133 -- 151Michael A. Charleston, Michael D. Hendy, David Penny. The Effects of Sequence Length, Tree Topology, and Number of Taxa on the Performance of Phylogenetic Methods
153 -- 163Mike A. Steel, László A. Székely, Michael D. Hendy. Reconstructing Trees When Sequence Sites Evolve at Variable Rates
165 -- 171Kenneth H. Fasman. Restructuring the Genome Data Base: A Model for a Federation of Biological Databases

Volume 1, Issue 1

1 -- 2. Editorial: Whither Computational Biology
3 -- 14G. Christian Overton, Jeffery S. Aaronson, Juergen Haas, Julie Adams. QGB: A System for Querying Sequence Database Fields and Features
15 -- 23Kimberly E. Forsten, Douglas A. Lauffenburger. Probability of Autocrine Ligand Capture by Cell-Surface Receptors: Implications for Ligand Secretion Measurements
25 -- 38Bing Leng, Bruce G. Buchanan, Hugh B. Nicholas. Protein Secondary Structure Prediction Using Two-Level Case-Based Reasoning
39 -- 50David J. States, Warren Gish. QGB: Combined Use of Sequence Similarity and Codon Bias for Coding Region Identification
51 -- 64Webb Miller, Mark Boguski, Balaji Raghavachari, Zheng Zhang 0004, Ross C. Hardison. Constructing Aligned Sequence Blocks
65 -- 76John W. Keele, James E. Wray, D. W. Behrens, Gary A. Rohrer, S. L. F. Sunden, Steven M. Kappes, Michael D. Bishop, R. T. Stone, Leeson J. Alexander, Craig Beattie. A Conceptual Database Model for Genomic Research
77 -- 92Vincent Ferretti, B. Franz Lang, David Sankoff. Skewed Base Compositions, Asymmetric Transition Matrices, and Phylogenetic Invariants