Journal: PLoS Computational Biology

Volume 13, Issue 11

0 -- 0Suzan Farhang-Sardroodi, Amir Hossein Darooneh, Moladad Nikbakht, Natalia L. Komarova, Mohammad Kohandel. The effect of spatial randomness on the average fixation time of mutants
0 -- 0Tetsuhiro S. Hatakeyama, Chikara Furusawa. Metabolic dynamics restricted by conserved carriers: Jamming and feedback
0 -- 0Daniel R. Romano, Matthew C. Pharris, Neal M. Patel, Tamara Kinzer-Ursem. Competitive tuning: Competition's role in setting the frequency-dependence of Ca2+-dependent proteins
0 -- 0Yanli Wang, Wing-Cheong Lo, Ching-Shan Chou. A modeling study of budding yeast colony formation and its relationship to budding pattern and aging
0 -- 0Emyr Bakker, Kun Tian, Luciano Mutti, Constantinos Demonacos, Jean-Marc Schwartz, Marija Krstic-Demonacos. Insight into glucocorticoid receptor signalling through interactome model analysis
0 -- 0Stefano Anzellotti, Alfonso Caramazza, Rebecca Saxe. Multivariate pattern dependence
0 -- 0Daniel Monsivais, Asim Ghosh, Kunal Bhattacharya, Robin I. M. Dunbar, Kimmo Kaski. Tracking urban human activity from mobile phone calling patterns
0 -- 0Stefan Albert, Katharina Schmack, Philipp Sterzer, Gaby Schneider. A hierarchical stochastic model for bistable perception
0 -- 0Mark A. Walker, Viatcheslav Gurev, John Jeremy Rice, Joseph L. Greenstein, Raimond L. Winslow. Estimating the probabilities of rare arrhythmic events in multiscale computational models of cardiac cells and tissue
0 -- 0Sushant Patkar, Assaf Magen, Roded Sharan, Sridhar Hannenhalli. A network diffusion approach to inferring sample-specific function reveals functional changes associated with breast cancer
0 -- 0Yun-Ching Chen, Valer Gotea, Gennady Margolin, Laura Elnitski. Significant associations between driver gene mutations and DNA methylation alterations across many cancer types
0 -- 0John A. P. Sekar, José Juan Tapia, James R. Faeder. Automated visualization of rule-based models
0 -- 0Alexis T. Baria, Brian Maniscalco, Biyu J. He. Initial-state-dependent, robust, transient neural dynamics encode conscious visual perception
0 -- 0Anthony Szedlak, Spencer Sims, Nicholas Smith, Giovanni Paternostro, Carlo Piermarocchi. Cell cycle time series gene expression data encoded as cyclic attractors in Hopfield systems
0 -- 0Thomas Coudrat, John Simms, Arthur Christopoulos, Denise Wootten, Patrick M. Sexton. Improving virtual screening of G protein-coupled receptors via ligand-directed modeling
0 -- 0Gonzalo E. Mena, Lauren E. Grosberg, Sasidhar Madugula, Pawel Hottowy, Alan M. Litke, John P. Cunningham, E. J. Chichilnisky, Liam Paninski. Electrical stimulus artifact cancellation and neural spike detection on large multi-electrode arrays
0 -- 0Jorge Fernandez-de-Cossio-Diaz, Kalet Leon, Roberto Mulet. Characterizing steady states of genome-scale metabolic networks in continuous cell cultures
0 -- 0Philip M. Tan, Kyle S. Buchholz, Jeffrey H. Omens, Andrew D. McCulloch, Jeffrey J. Saucerman. Predictive model identifies key network regulators of cardiomyocyte mechano-signaling
0 -- 0Florian Rohart, Benoît Gautier, Amrit Singh, Kim-Anh Lê Cao. mixOmics: An R package for 'omics feature selection and multiple data integration
0 -- 0Li Jiang, Luca Giuggioli, Andrea Perna, Ramón Escobedo, Valentin Lecheval, Clément Sire, Zhangang Han, Guy Theraulaz. Identifying influential neighbors in animal flocking
0 -- 0Edwin van Leeuwen, Petra Klepac, Dominic Thorrington, Richard Pebody, Marc Baguelin. fluEvidenceSynthesis: An R package for evidence synthesis based analysis of epidemiological outbreaks
0 -- 0Michael F. Sloma, David H. Mathews. Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs
0 -- 0Masoud Nickaeen, Igor L. Novak, Stephanie Pulford, Aaron Rumack, Jamie Brandon, Boris M. Slepchenko, Alex Mogilner. A free-boundary model of a motile cell explains turning behavior
0 -- 0Marie Devaine, Aurore San-Galli, Cinzia Trapanese, Giulia Bardino, Christelle Hano, Michel Saint Jalme, Sébastien Bouret, Shelly Masi, Jean Daunizeau. Reading wild minds: A computational assay of Theory of Mind sophistication across seven primate species
0 -- 0Richard D. Smith, Jing Lu, Heather A. Carlson. Are there physicochemical differences between allosteric and competitive ligands?
0 -- 0Alizée Lopez-Persem, Lionel Rigoux, Sacha Bourgeois-Gironde, Jean Daunizeau, Mathias Pessiglione. Choose, rate or squeeze: Comparison of economic value functions elicited by different behavioral tasks
0 -- 0David J. Price, Alexandre Breuzé, Richard Dybowski, Piero Mastroeni, Olivier Restif. An efficient moments-based inference method for within-host bacterial infection dynamics
0 -- 0Rosemary M. McCloskey, Art F. Y. Poon. A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation
0 -- 0Shaima Hashem, Matteo Tiberti, Arianna Fornili. Allosteric modulation of cardiac myosin dynamics by omecamtiv mecarbil
0 -- 0Alejandro Fernández Villaverde, Julio R. Banga. Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation
0 -- 0Ronny Straube, Meera Shah, Dietrich Flockerzi, Dieter A. Wolf. Trade-off and flexibility in the dynamic regulation of the cullin-RING ubiquitin ligase repertoire
0 -- 0Emma Schwager, Himel Mallick, Steffen Ventz, Curtis Huttenhower. A Bayesian method for detecting pairwise associations in compositional data
0 -- 0Teresa K. Yamana, Sasikiran Kandula, Jeffrey Shaman. Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States
0 -- 0Guo-Shi Li, Thomas A. Cleland. A coupled-oscillator model of olfactory bulb gamma oscillations
0 -- 0Yuriy Pichugin, Jorge Peña 0001, Paul B. Rainey, Arne Traulsen. Fragmentation modes and the evolution of life cycles
0 -- 0Jeffrey Shaman, Sasikiran Kandula, Wan Yang, Alicia Karspeck. The use of ambient humidity conditions to improve influenza forecast
0 -- 0Franciszek Rakowski, Jan Karbowski. Optimal synaptic signaling connectome for locomotory behavior in Caenorhabditis elegans: Design minimizing energy cost
0 -- 0André Luzardo, Eduardo Alonso, Esther Mondragón. A Rescorla-Wagner drift-diffusion model of conditioning and timing
0 -- 0Ruolin Liu, Julie A. Dickerson. Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq
0 -- 0Zoltan Neufeld, William von Witt, Dora Lakatos, Jiaming Wang, Balazs Hegedus, Andras Czirok. The role of Allee effect in modelling post resection recurrence of glioblastoma