Journal: PLoS Computational Biology

Volume 14, Issue 5

0 -- 0Nathanaël Hozé, Sebastian Bonhoeffer, Roland Regoes. Assessing the public health impact of tolerance-based therapies with mathematical models
0 -- 0Philipp Berens, Jeremy Freeman, Thomas Deneux, Nicolay Chenkov, Thomas McColgan, Artur Speiser, Jakob H. Macke, Srinivas C. Turaga, Patrick Mineault, Peter Rupprecht, Stephan Gerhard, Rainer W. Friedrich, Johannes Friedrich, Liam Paninski, Marius Pachitariu, Kenneth D. Harris, Ben Bolte, Timothy A. Machado, Dario Ringach, Jasmine Stone, Luke E. Rogerson, Nicolas J. Sofroniew, Jacob Reimer, Emmanouil Froudarakis, Thomas Euler, Miroslav Román Rosón, Lucas Theis, Andreas S. Tolias, Matthias Bethge. Community-based benchmarking improves spike rate inference from two-photon calcium imaging data
0 -- 0Surya K. Ghosh, Daniel Jost. How epigenome drives chromatin folding and dynamics, insights from efficient coarse-grained models of chromosomes
0 -- 0Thanos Manos, Magteld Zeitler, Peter A. Tass. How stimulation frequency and intensity impact on the long-lasting effects of coordinated reset stimulation
0 -- 0Benjamin Skerritt-Davis, Mounya Elhilali. Detecting change in stochastic sound sequences
0 -- 0Milana Frenkel-Morgenstern, Lonnie R. Welch, Bruno A. Gaëta, Diane E. Kovats. Art in Science Competition invites artworks to the annual exhibition on ISMB 2018 in Chicago
0 -- 0Daniel Mietchen, Shoshana J. Wodak, Szymon Wasik, Natalia Szostak, Christophe Dessimoz. Submit a Topic Page to PLOS Computational Biology and Wikipedia
0 -- 0Milad Hobbi Mobarhan, Geir Halnes, Pablo Martínez-Cañada, Torkel Hafting, Marianne Fyhn, Gaute T. Einevoll. Firing-rate based network modeling of the dLGN circuit: Effects of cortical feedback on spatiotemporal response properties of relay cells
0 -- 0William Hedley Thompson, Craig G. Richter, Pontus Plavén-Sigray, Peter Fransson. Simulations to benchmark time-varying connectivity methods for fMRI
0 -- 0Eli J. Müller, Peter A. Robinson. Quantitative theory of deep brain stimulation of the subthalamic nucleus for the suppression of pathological rhythms in Parkinson's disease
0 -- 0Lazaro M. Sanchez-Rodriguez, Yasser Iturria-Medina, Erica A. Baines, Sabela C. Mallo, Mehdy Dousty, Roberto C. Sotero, on behalf of The Alzheimer's Disease Neuroimaging Initiative. Design of optimal nonlinear network controllers for Alzheimer's disease
0 -- 0Damiano Pasetto, Flavio Finger, Anton Camacho, Francesco Grandesso, Sandra Cohuet, Joseph C. Lemaitre, Andrew S. Azman, Francisco J. Luquero, Enrico Bertuzzo, Andrea Rinaldo. Near real-time forecasting for cholera decision making in Haiti after Hurricane Matthew
0 -- 0Vicente Botella-Soler, Stéphane Deny, Georg Martius, Olivier Marre, Gasper Tkacik. Nonlinear decoding of a complex movie from the mammalian retina
0 -- 0Matthew E. MacGilvray, Evgenia Shishkova, Deborah Chasman, Michael Place, Anthony Gitter, Joshua J. Coon, Audrey P. Gasch. Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response
0 -- 0Jonathan E. Ron, Itai Pinkoviezky, Ehud Fonio, Ofer Feinerman, Nir S. Gov. Bi-stability in cooperative transport by ants in the presence of obstacles
0 -- 0Anton V. Chizhov, Artyom V. Zefirov, Dmitry V. Amakhin, Elena Yu. Smirnova, Aleksey V. Zaitsev. Minimal model of interictal and ictal discharges "Epileptor-2"
0 -- 0Christiana N. Fogg, Diane E. Kovats, Ron Shamir. 2018 ISCB accomplishments by a senior scientist award
0 -- 0Yun Tao, Katriona Shea, Matthew J. Ferrari. Logistical constraints lead to an intermediate optimum in outbreak response vaccination
0 -- 0Ji Hyun Bak, Seogjoo J. Jang, Chang-hyeon Lim. Implications for human odor sensing revealed from the statistics of odorant-receptor interactions
0 -- 0Shoichiro Yamaguchi, Honda Naoki, Muneki Ikeda, Yuki Tsukada, Shunji Nakano, Ikue Mori, Shin Ishii. Identification of animal behavioral strategies by inverse reinforcement learning
0 -- 0Han-Lin Hsieh, Maryam M. Shanechi. Optimizing the learning rate for adaptive estimation of neural encoding models
0 -- 0Christiana N. Fogg, Diane E. Kovats, Ron Shamir. 2018 outstanding contributions to ISCB award: Russ Altman
0 -- 0Paul A. Roberts, Ryan M. Huebinger, Emma Keen, Anne-Marie Krachler, Sara Jabbari. Predictive modelling of a novel anti-adhesion therapy to combat bacterial colonisation of burn wounds
0 -- 0Jagannath Mondal, Navjeet Ahalawat, Subhendu Pandit, Lewis E. Kay, Pramodh Vallurupalli. Atomic resolution mechanism of ligand binding to a solvent inaccessible cavity in T4 lysozyme
0 -- 0Andreas Petrides, Glenn Vinnicombe. Enzyme sequestration by the substrate: An analysis in the deterministic and stochastic domains
0 -- 0Lubomir Tomaska, Jozef Nosek. Ten simple rules for writing a cover letter to accompany a job application for an academic position
0 -- 0Linda Dib, Nicolas Salamin, David Gfeller. Polymorphic sites preferentially avoid co-evolving residues in MHC class I proteins
0 -- 0Caroline H. Roney, Jason D. Bayer, Hubert Cochet, Marianna Meo, Rémi Dubois, Pierre Jaïs, Edward J. Vigmond. Variability in pulmonary vein electrophysiology and fibrosis determines arrhythmia susceptibility and dynamics
0 -- 0Kevin Breslin, John Joseph Wade, KongFatt Wong-Lin, Jim Harkin, Bronac Flanagan, Harm Van Zalinge, Steve Hall, Matthew Walker, Alexei Verkhratsky, Liam McDaid. Potassium and sodium microdomains in thin astroglial processes: A computational model study
0 -- 0Aaron T. L. Lun, Hervé Pagès, Mike L. Smith. beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types
0 -- 0Méziane Aite, Marie Chevallier, Clémence Frioux, Camille Trottier, Jeanne Got, María Paz Cortés, Sebastián N. Mendoza, Grégory Carrier, Olivier Dameron, Nicolas Guillaudeux, Mauricio Latorre, Nicolás Loira, Gabriel V. Markov, Alejandro Maass, Anne Siegel. Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models
0 -- 0Seth Haney, Jessica Konen, Adam I. Marcus, Maxim Bazhenov. The complex ecosystem in non small cell lung cancer invasion
0 -- 0Andrew D. Rouillard, Mark Hurle, Pankaj Agarwal. Systematic interrogation of diverse Omic data reveals interpretable, robust, and generalizable transcriptomic features of clinically successful therapeutic targets
0 -- 0Florian Aspart, Michiel W. H. Remme, Klaus Obermayer. Differential polarization of cortical pyramidal neuron dendrites through weak extracellular fields
0 -- 0Arturo Blazquez-Navarro, Thomas Schachtner, Ulrik Stervbo, Anett Sefrin, Maik Stein, Timm H. Westhoff, Petra Reinke, Edda Klipp, Nina Babel, Avidan U. Neumann, Michal Or-Guil. Differential T cell response against BK virus regulatory and structural antigens: A viral dynamics modelling approach
0 -- 0Joseph B. Dechery, Jason N. MacLean. Functional triplet motifs underlie accurate predictions of single-trial responses in populations of tuned and untuned V1 neurons
0 -- 0Tim van Mourik, Lukas Snoek, Tomas Knapen, David G. Norris. Porcupine: A visual pipeline tool for neuroimaging analysis
0 -- 0Carlos Espinosa-Soto. On the role of sparseness in the evolution of modularity in gene regulatory networks
0 -- 0Aaditya V. Rangan, Caroline C. McGrouther, John Kelsoe, Nicholas Schork, Eli Stahl, Qian Zhu, Arjun Krishnan, Vicky Yao, Olga G. Troyanskaya, Seda Bilaloglu, Preeti Raghavan, Sarah Bergen, Anders Jureus, Mikael Landen. A loop-counting method for covariate-corrected low-rank biclustering of gene-expression and genome-wide association study data
0 -- 0Rui Ma, Julien Berro. Structural organization and energy storage in crosslinked actin assemblies
0 -- 0Marissa Renardy, Tau-Mu Yi, Dongbin Xiu, Ching-Shan Chou. Parameter uncertainty quantification using surrogate models applied to a spatial model of yeast mating polarization
0 -- 0Gonçalo M. Marques, Starrlight Augustine, Konstadia Lika, Laure Pecquerie, Tiago Domingos, Sebastiaan A. L. M. Kooijman. The AmP project: Comparing species on the basis of dynamic energy budget parameters
0 -- 0Viola Priesemann, Oren Shriki. Can a time varying external drive give rise to apparent criticality in neural systems?
0 -- 0Peter Helfer, Thomas R. Shultz. Coupled feedback loops maintain synaptic long-term potentiation: A computational model of PKMzeta synthesis and AMPA receptor trafficking