Journal: PLoS Computational Biology

Volume 14, Issue 9

0 -- 0Zeynep Ertem, Dorrie Raymond, Lauren Ancel Meyers. Optimal multi-source forecasting of seasonal influenza
0 -- 0Jörn H. Buchbinder, Dennis Pischel, Kai Sundmacher, Robert J. Flassig, Inna N. Lavrik. Quantitative single cell analysis uncovers the life/death decision in CD95 network
0 -- 0Tatu Pantsar, Sami Rissanen, Daniel Dauch, Tuomo Laitinen, Ilpo Vattulainen, Antti Poso. Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling
0 -- 0Sergi Elizalde, Ashley M. Laughney, Samuel F. Bakhoum. A Markov chain for numerical chromosomal instability in clonally expanding populations
0 -- 0Helmut Schmidt, Daniele Avitabile, Ernest Montbrió, Alex Roxin. Network mechanisms underlying the role of oscillations in cognitive tasks
0 -- 0Kaushik J. Lakshminarasimhan, Alexandre Pouget, Gregory C. DeAngelis, Dora E. Angelaki, Xaq Pitkow. Inferring decoding strategies for multiple correlated neural populations
0 -- 0Callie J. Miller, Demetrius Harris, Robert Weaver, G. Bard Ermentrout, Lance A. Davidson. Emergent mechanics of actomyosin drive punctuated contractions and shape network morphology in the cell cortex
0 -- 0Farzaneh Khajouei, Saurabh Sinha. An information theoretic treatment of sequence-to-expression modeling
0 -- 0Lia Papadopoulos, Pablo Blinder, Henrik Ronellenfitsch, Florian Klimm, Eleni Katifori, David Kleinfeld, Danielle S. Bassett. Comparing two classes of biological distribution systems using network analysis
0 -- 0Bin Wu, Lei Zhou. Individualised aspiration dynamics: Calculation by proofs
0 -- 0Sean M. Cascarina, Eric D. Ross. Proteome-scale relationships between local amino acid composition and protein fates and functions
0 -- 0Davide Risso, Liam Purvis, Russell B. Fletcher, Diya Das, John Ngai, Sandrine Dudoit, Elizabeth Purdom. clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets
0 -- 0Ivilin Stoianov, Cyriel M. A. Pennartz, Carien Lansink, Giovanni Pezzulo. Model-based spatial navigation in the hippocampus-ventral striatum circuit: A computational analysis
0 -- 0Rosanna Migliore, Carmen Alina Lupascu, Luca L. Bologna, Armando Romani, Jean-Denis Courcol, Stefano Antonel, Werner Van Geit, Alex M. Thomson, Audrey Mercer, Sigrun Lange, Joanne Falck, Christian Rössert, Ying Shi, Olivier Hagens, Maurizio Pezzoli, Tamás F. Freund, Szabolcs Káli, Eilif B. Müller, Felix Schürmann, Henry Markram, Michele Migliore. The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow
0 -- 0Weizhong Chen, Yi Liu, Shanshan Zhu, Guoyu Chen, Jing-Dong J. Han. Inter-nucleosomal communication between histone modifications for nucleosome phasing
0 -- 0Jan Poleszczuk, Malgorzata Debowska, Wojciech Dabrowski, Alicja Wojcik-Zaluska, Wojciech Zaluska, Jacek Waniewski. Patient-specific pulse wave propagation model identifies cardiovascular risk characteristics in hemodialysis patients
0 -- 0Itamar Eliakim, Zahi Cohen, Gabor Kosa, Yossi Yovel. A fully autonomous terrestrial bat-like acoustic robot
0 -- 0Vijay Vedula, Juhyun Lee, Hao Xu, C. C. Jay Kuo, Tzung K. Hsiai, Alison L. Marsden. Correction: A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling
0 -- 0Robert Planqué, Josephus Hulshof, Bas Teusink, Johannes C. Hendriks, Frank J. Bruggeman. Maintaining maximal metabolic flux by gene expression control
0 -- 0Gabriele Pedruzzi, Ayuna Barlukova, Igor M. Rouzine. Evolutionary footprint of epistasis
0 -- 0Emelie Flood, Céline Boiteux, Toby W. Allen. Selective ion permeation involves complexation with carboxylates and lysine in a model human sodium channel
0 -- 0Hyuntae Na, Guang Song. All-atom normal mode dynamics of HIV-1 capsid
0 -- 0Rowan D. Brackston, Eszter Lakatos, Michael P. H. Stumpf. Transition state characteristics during cell differentiation
0 -- 0Andrey Babichev, Dmitriy Morozov, Yuri Dabaghian. Robust spatial memory maps encoded by networks with transient connections
0 -- 0Marcus A. Triplett, Lilach Avitan, Geoffrey J. Goodhill. Emergence of spontaneous assembly activity in developing neural networks without afferent input
0 -- 0Nikhil Bhagwat, Joseph D. Viviano, Aristotle N. Voineskos, M. Mallar Chakravarty, Alzheimer's Disease Neuroimaging Initiative. Modeling and prediction of clinical symptom trajectories in Alzheimer's disease using longitudinal data
0 -- 0Fridolin Gross, Paolo Bonaiuti, Silke Hauf, Andrea Ciliberto. Implications of alternative routes to APC/C inhibition by the mitotic checkpoint complex
0 -- 0Oliver Hädicke, Axel von Kamp, Timur Aydogan, Steffen Klamt. OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli
0 -- 0Ahmed Abdul Quadeer, David Morales-Jiménez, Matthew R. McKay. Co-evolution networks of HIV/HCV are modular with direct association to structure and function
0 -- 0Makoto Fukushima, Olaf Sporns. Comparison of fluctuations in global network topology of modeled and empirical brain functional connectivity
0 -- 0Yafei Lyu, Lingzhou Xue, Feipeng Zhang, Hillary Koch, Laura M. Saba, Katerina Kechris, Qunhua Li. Condition-adaptive fused graphical lasso (CFGL): An adaptive procedure for inferring condition-specific gene co-expression network
0 -- 0Alex J. Cope, Eleni Vasilaki, Dorian Minors, Chelsea Sabo, James A. R. Marshall, Andrew B. Barron. Abstract concept learning in a simple neural network inspired by the insect brain
0 -- 0Hamidreza Jamalabadi, Sarah Alizadeh, Monika Schönauer, Christian Leibold, Steffen Gais. Multivariate classification of neuroimaging data with nested subclasses: Biased accuracy and implications for hypothesis testing
0 -- 0Kristopher A. Hunt, Ryan M. Jennings, William P. Inskeep, Ross P. Carlson. Multiscale analysis of autotroph-heterotroph interactions in a high-temperature microbial community
0 -- 0Alexander J. Titus, Audrey Flower, Patrick Hagerty, Paul Gamble, Charlie Lewis, Todd Stavish, Kevin P. OConnell, Greg Shipley, Stephanie M. Rogers. SIG-DB: Leveraging homomorphic encryption to securely interrogate privately held genomic databases
0 -- 0Edward M. Hill, Thomas House, Madhur S. Dhingra, Wantanee Kalpravidh, Subhash Morzaria, Muzaffar G. Osmani, Eric Brum, Mat Yamage, Md. A. Kalam, Diann J. Prosser, John Y. Takekawa, Xiangming Xiao, Marius Gilbert, Michael J. Tildesley. The impact of surveillance and control on highly pathogenic avian influenza outbreaks in poultry in Dhaka division, Bangladesh
0 -- 0Francisco José Esteban 0001, Javier A. Galadí, José A. Langa, José Ramón Portillo, Fernando Soler-Toscano. Informational structures: A dynamical system approach for integrated information