Journal: PLoS Computational Biology

Volume 9, Issue 1

0 -- 0Stefan Wuchty, Dolores Arjona, Peter O. Bauer. Important miRs of Pathways in Different Tumor Types
0 -- 0Hang Yu, Klaus Schulten. Membrane Sculpting by F-BAR Domains Studied by Molecular Dynamics Simulations
0 -- 0Jing Dong, Jiazhang Qiu, Yu Zhang, Chongjian Lu, Xiaohan Dai, Jianfeng Wang, Hongen Li, Xin Wang, Wei Tan, Mingjing Luo, Xiaodi Niu, Xuming Deng. Oroxylin A Inhibits Hemolysis via Hindering the Self-Assembly of α-Hemolysin Heptameric Transmembrane Pore
0 -- 0Ming Hu, Ke Deng, Zhaohui S. Qin, Jesse Dixon, Siddarth Selvaraj, Jennifer Fang, Bing Ren, Jun S. Liu. Bayesian Inference of Spatial Organizations of Chromosomes
0 -- 0Gkikas Magiorkinis, Vana Sypsa, Emmanouil Magiorkinis, Dimitrios Paraskevis, Antigoni Katsoulidou, Robert Belshaw, Christophe Fraser, Oliver George Pybus, Angelos Hatzakis. Integrating Phylodynamics and Epidemiology to Estimate Transmission Diversity in Viral Epidemics
0 -- 0Nol Chindapol, Jaap A. Kaandorp, Carolina Cronemberger, Tali Mass, Amatzia Genin. Pocillopora verrucosa and the Influence of Hydrodynamics
0 -- 0Pengsheng Zheng, Christos Dimitrakakis, Jochen Triesch. Network Self-Organization Explains the Statistics and Dynamics of Synaptic Connection Strengths in Cortex
0 -- 0Mario Pujato, Thomas MacCarthy, András Fiser, Aviv Bergman. The Underlying Molecular and Network Level Mechanisms in the Evolution of Robustness in Gene Regulatory Networks
0 -- 0Thomas Lemmin, Cinque S. Soto, Graham Clinthorne, William F. DeGrado, Matteo Dal Peraro. E. coli PhoQ Histidine Kinase: Implications for Signal Transduction from Molecular Simulations
0 -- 0Cibele Vieira Falkenberg, Leslie M. Loew. Computational Analysis of Rho GTPase Cycling
0 -- 0Wyming Lee Pang, Amardeep Kaur, Alexander V. Ratushny, Aleksandar Cvetkovic, Sunil Kumar, Min Pan, Adam P. Arkin, John D. Aitchison, Michael W. W. Adams, Nitin S. Baliga. Metallochaperones Regulate Intracellular Copper Levels
0 -- 0Anatoly Rinberg, Adam L. Taylor, Eve Marder. The Effects of Temperature on the Stability of a Neuronal Oscillator
0 -- 0Jeroen de Ridder, Thomas Abeel, Magali Michaut, Venkata P. Satagopam, Nils Gehlenborg. Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator
0 -- 0Vladislav Volman, Maxim Bazhenov, Terrence J. Sejnowski. Divide and Conquer: Functional Segregation of Synaptic Inputs by Astrocytic Microdomains Could Alleviate Paroxysmal Activity Following Brain Trauma
0 -- 0Yohan Kim, Jonathan W. Yewdell, Alessandro Sette, Björn Peters. Positional Bias of MHC Class I Restricted T-Cell Epitopes in Viral Antigens Is Likely due to a Bias in Conservation
0 -- 0Luca Ciandrini, Ian Stansfield, M. Carmen Romano. Ribosome Traffic on mRNAs Maps to Gene Ontology: Genome-wide Quantification of Translation Initiation Rates and Polysome Size Regulation
0 -- 0Mathieu d'Acremont, Eleonora Fornari, Peter Bossaerts. Activity in Inferior Parietal and Medial Prefrontal Cortex Signals the Accumulation of Evidence in a Probability Learning Task
0 -- 0A. Ercument Cicek, Ilya Bederman, Leigh Henderson, Mitchell L. Drumm, Gultekin Özsoyoglu. ADEMA: An Algorithm to Determine Expected Metabolite Level Alterations Using Mutual Information
0 -- 0Satomi Matsuoka, Tatsuo Shibata, Masahiro Ueda. Asymmetric PTEN Distribution Regulated by Spatial Heterogeneity in Membrane-Binding State Transitions
0 -- 0Martin H. Schaefer, Tiago J. S. Lopes, Nancy Mah, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Caroline Louis-Jeune, Amie J. Eisfeld, Gabriele Neumann, Carol Perez-Iratxeta, Yoshihiro Kawaoka, Hiroaki Kitano, Miguel A. Andrade-Navarro. Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions
0 -- 0Yann Le Cunff, Annette Baudisch, Khashayar Pakdaman. How Evolving Heterogeneity Distributions of Resource Allocation Strategies Shape Mortality Patterns
0 -- 0Holly E. Gerhard, Felix A. Wichmann, Matthias Bethge. How Sensitive Is the Human Visual System to the Local Statistics of Natural Images?
0 -- 0Cédric Debès, Minglei Wang, Gustavo Caetano-Anollés, Frauke Gräter. Evolutionary Optimization of Protein Folding
0 -- 0Anne L. Wheeler, Cátia M. Teixeira, Afra H. Wang, Xuejian Xiong, Natasa Kovacevic, Jason P. Lerch, Anthony Randal McIntosh, John Parkinson, Paul W. Frankland. Identification of a Functional Connectome for Long-Term Fear Memory in Mice
0 -- 0Linan Xu, Naushaba Hasin, Manli Shen, Jianwei He, Youlin Xue, Xiaohong Zhou, Sarah Perrett, Youtao Song, Gary W. Jones. Using Steered Molecular Dynamics to Predict and Assess Hsp70 Substrate-Binding Domain Mutants that Alter Prion Propagation
0 -- 0Ruian Ke, Piers J. Ingram, Ken Haynes. An Integrative Model of Ion Regulation in Yeast
0 -- 0Chiara Pastrello, David Otasek, Kristen Fortney, Giuseppe Agapito, Mario Cannataro, Elize Shirdel, Igor Jurisica. Visual Data Mining of Biological Networks: One Size Does Not Fit All
0 -- 0Niklas Wilming, Simon Harst, Nico M. Schmidt, Peter König. Saccadic Momentum and Facilitation of Return Saccades Contribute to an Optimal Foraging Strategy
0 -- 0Fabian H. Sinz, Matthias Bethge. Temporal Adaptation Enhances Efficient Contrast Gain Control on Natural Images
0 -- 0Corentin M. Barbu, Andrew Hong, Jennifer M. Manne, Dylan S. Small, Javier E. Quintanilla Calderón, Karthik Sethuraman, Víctor Quispe-Machaca, Jenny Ancca-Juárez, Juan G. Cornejo del Carpio, Fernando S. Málaga Chavez, César Náquira, Michael Z. Levy. The Effects of City Streets on an Urban Disease Vector
0 -- 0Jeromos Vukov, Flávio L. Pinheiro, Francisco C. Santos, Jorge M. Pacheco. Reward from Punishment Does Not Emerge at All Costs
0 -- 0Graham Rockwell, Nicholas J. Guido, George M. Church. Redirector: Designing Cell Factories by Reconstructing the Metabolic Objective
0 -- 0Kristy Nowak-Lovato, Ludmil B. Alexandrov, Afsheen Banisadr, Amy L. Bauer, Alan R. Bishop, Anny Usheva, Fangping Mu, Elizabeth Hong-Geller, Kim Ø. Rasmussen, William S. Hlavacek, Boian S. Alexandrov. Binding of Nucleoid-Associated Protein Fis to DNA Is Regulated by DNA Breathing Dynamics
0 -- 0Sandra V. Bennun, Kevin J. Yarema, Michael J. Betenbaugh, Frederick J. Krambeck. Integration of the Transcriptome and Glycome for Identification of Glycan Cell Signatures
0 -- 0Giovanni Settanni, David Serquera, Piotr E. Marszalek, Emanuele Paci, Laura S. Itzhaki. Effects of Ligand Binding on the Mechanical Properties of Ankyrin Repeat Protein Gankyrin
0 -- 0Nives Skunca, Matko Bosnjak, Anita Krisko, Pance Panov, Saso Dzeroski, Tomislav Smuc, Fran Supek. Phyletic Profiling with Cliques of Orthologs Is Enhanced by Signatures of Paralogy Relationships
0 -- 0Sebastian Funk, Hiroshi Nishiura, Hans Heesterbeek, W. John Edmunds, Francesco Checchi. Identifying Transmission Cycles at the Human-Animal Interface: The Role of Animal Reservoirs in Maintaining Gambiense Human African Trypanosomiasis
0 -- 0Juliane Liepe, Sarah Filippi, Michal Komorowski, Michael P. H. Stumpf. Maximizing the Information Content of Experiments in Systems Biology
0 -- 0Karen E. Joyce, Satoru Hayasaka, Paul J. Laurienti. The Human Functional Brain Network Demonstrates Structural and Dynamical Resilience to Targeted Attack
0 -- 0Andrew H. Beck, Nicholas W. Knoblauch, Marco M. Hefti, Jennifer Kaplan, Stuart J. Schnitt, Aedín C. Culhane, Markus S. Schröder, Thomas Risch, John Quackenbush, Benjamin Haibe-Kains. Significance Analysis of Prognostic Signatures
0 -- 0Mikael Sunnåker, Alberto Giovanni Busetto, Elina Numminen, Jukka Corander, Matthieu Foll, Christophe Dessimoz. Approximate Bayesian Computation
0 -- 0Giovanni Lo Iacono, Frank van den Bosch, Chris A. Gilligan. Durable Resistance to Crop Pathogens: An Epidemiological Framework to Predict Risk under Uncertainty
0 -- 0Stefka Tyanova, Jürgen Cox, Jesper V. Olsen, Matthias Mann 0002, Dmitrij Frishman. Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins
0 -- 0George Forrest Young, Luca Scardovi, Andrea Cavagna, Irene Giardina, Naomi Ehrich Leonard. Starling Flock Networks Manage Uncertainty in Consensus at Low Cost
0 -- 0Michael A. Buice, Carson C. Chow. Dynamic Finite Size Effects in Spiking Neural Networks
0 -- 0Cornelis van de Kamp, Peter J. Gawthrop, Henrik Gollee, Ian D. Loram. Refractoriness in Sustained Visuo-Manual Control: Is the Refractory Duration Intrinsic or Does It Depend on External System Properties?
0 -- 0Omry Koren, Dan Knights, Antonio Gonzalez, Levi Waldron, Nicola Segata, Rob Knight, Curtis Huttenhower, Ruth E. Ley. A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets