| 177 | -- | 0 | Marie-France Sagot. EIC Editorial |
| 178 | -- | 179 | Ion I. Mandoiu, Yi Pan, Raj Sunderraman, Alexander Zelikovsky. Guest Editors Introduction to the Special Section on Bioinformatics Research and Applications |
| 180 | -- | 189 | Todd J. Treangen, Aaron E. Darling, Guillaume Achaz, Mark A. Ragan, Xavier Messeguer, Eduardo P. C. Rocha. A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats |
| 190 | -- | 199 | Shibin Qiu, Terran Lane. A Framework for Multiple Kernel Support Vector Regression and Its Applications to siRNA Efficacy Prediction |
| 200 | -- | 212 | Yongjin Park, Stanley Shackney, Russell Schwartz. Network-Based Inference of Cancer Progression from Microarray Data |
| 213 | -- | 220 | Qian Zhu, Zaky Adam, Vicky Choi, David Sankoff. Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast Evolution |
| 221 | -- | 231 | Mukul S. Bansal, Oliver Eulenstein, André Wehe. The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI-Based Local Searches |
| 232 | -- | 243 | Yanni Sun, Jeremy Buhler. Designing Patterns and Profiles for Faster HMM Search |
| 244 | -- | 259 | Jahangheer S. Shaik, Mohammed Yeasin. Fuzzy-Adaptive-Subspace-Iteration-Based Two-Way Clustering of Microarray Data |
| 260 | -- | 270 | Matthieu Vignes, Florence Forbes. Gene Clustering via Integrated Markov Models Combining Individual and Pairwise Features |
| 271 | -- | 280 | Lenwood S. Heath, Allan A. Sioson. Semantics of Multimodal Network Models |
| 281 | -- | 295 | Ana Arribas-Gil, Dirk Metzler, Jean-Louis Plouhinec. Statistical Alignment with a Sequence Evolution Model Allowing Rate Heterogeneity along the Sequence |
| 296 | -- | 309 | Gunther H. Weber, Oliver Rübel, Min-Yu Huang, Angela H. DePace, Charless C. Fowlkes, Soile V. E. Keränen, Cris L. Luengo Hendriks, Hans Hagen, David W. Knowles, Jitendra Malik, Mark D. Biggin, Bernd Hamann. Visual Exploration of Three-Dimensional Gene Expression Using Physical Views and Linked Abstract Views |
| 310 | -- | 320 | Edward R. Dougherty, Marcel Brun, Jeffrey M. Trent, Michael L. Bittner. Conditioning-Based Modeling of Contextual Genomic Regulation |
| 321 | -- | 332 | Lenwood S. Heath, Allan A. Sioson. Multimodal Networks: Structure and Operations |
| 333 | -- | 343 | Naoto Yukinawa, Shigeyuki Oba, Kikuya Kato, Shin Ishii. Optimal Aggregation of Binary Classifiers for Multiclass Cancer Diagnosis Using Gene Expression Profiles |
| 344 | -- | 352 | Victor Olman, Fenglou Mao, Hongwei Wu, Ying Xu. Parallel Clustering Algorithm for Large Data Sets with Applications in Bioinformatics |
| 353 | -- | 367 | Topon Kumar Paul, Hitoshi Iba. Prediction of Cancer Class with Majority Voting Genetic Programming Classifier Using Gene Expression Data |