Abstract is missing.
- REPO-TRIAL: Common mechanism-based drug repurposing and endophenotypingHarald Schmidt. 1-2 [doi]
- Automatic Liver Segmentation Using Multi-plane Integrated Fully Convolutional Neural NetworksChi Wang, Hong Song, Lei Chen, Qiang Li, Jian Yang, Xiaohua Tony Hu, Le Zhang. 1-6 [doi]
- HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant NeoplasmsQingqing Li, Zhihao Yang, Zhehuan Zhao, Ling Luo, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Yijia Zhang. 1-3 [doi]
- An Extracting Method of Symmetry Plane from Head CT images for Surgery Based on OBB and Image Mutual InformationWenjun Tan, Ying Kang, Zhiwei Dong, Jinzhu Yang, Ying Su, Li Zhang, Lisheng Xu, Dazhe Zhao. 1-8 [doi]
- Nanopore SimulatION - a raw data simulator for Nanopore SequencingChristian Rohrandt, Nadine Kraft, Pay Gieselmann, Bjorn Brandl, Bernhard M. Schuldt, Ulrich Jetzek, Franz-Josef Muller. 1-8 [doi]
- A Signal Quality Assessment Method for Electrocardiography Acquired by Mobile DeviceJunjie Zhang, Liping Wang, Wenjie Zhang, Junjie Yao. 1-3 [doi]
- From gene panels to systems medicineJan Baumbach. 3 [doi]
- An Overview of Bioinformatics Challenges for Human Cell AtlasXuegong Zhang. 4 [doi]
- Active Learning for microRNA PredictionMohsen Sheikh Hassani, James R. Green. 5-12 [doi]
- AiProAnnotator: Low-rank Approximation with network side information for high-performance, large-scale human Protein abnormality AnnotatorJunning Gao, Shuwei Yao, Hiroshi Mamitsuka, Shanfeng Zhu. 13-20 [doi]
- Measuring the three-dimensional structural properties of topologically associating domainsTong Liu, Zheng Wang. 21-28 [doi]
- BLRM: A Basic Linear Ranking Model for Protein Interface PredictionBasir Shariat, Don Neumann, Asa Ben-Hur. 29-35 [doi]
- Examining Tumor Phylogeny Inference in Noisy Sequencing DataKiran Tomlinson, Layla Oesper. 36-43 [doi]
- PAAM-ML: A novel Phylogeny and Abundance aware Machine Learning Modelling Approach for Microbiome ClassificationJyotsna Talreja Wassan, Haiying Wang, Fiona Browne, Huiru Zheng. 44-49 [doi]
- Sequence-derived linear neighborhood propagation method for predicting lncRNA-miRNA interactionsWen Zhang, Guifeng Tang, Siman Wang, Yanlin Chen, Shuang Zhou, Xiaohong Li. 50-55 [doi]
- Reconstructing and Decomposing Protein Energy Landscapes to Organize Structure Spaces and Reveal Biologically-active StatesNasrin Akhter, Jing Lei, Wanli Qiao, Amarda Shehu. 56-60 [doi]
- Finding a Center Tree of Phylogenetic Trees via Leaf RemovalZhi-Zhong Chen, Shohei Ueta, Jingyu Li, Lusheng Wang. 61-64 [doi]
- DeepMVF-RBP: Deep Multi-view Fusion Representation Learning for RNA-binding Proteins PredictionXiuquan Du, Yanyu Diao, Yu Yao, Huaixu Zhu, Yuan-ting Yan, Yanping Zhang. 65-68 [doi]
- Learning Protein Structural Fingerprints under the Label-Free Supervision of Domain KnowledgeYaosen Min, Shang Liu, Chenyao Lou, Xuefeng Cui. 69-74 [doi]
- Using supervised learning successful descriptors to perform protein structural classification through unsupervised learningCleiton Monteiro, Vinicio Mendes, Giovanni Comarela, Sabrina de Azevedo Silveira. 75-78 [doi]
- Inferring time-consistent and well-supported horizontal gene transfersAgnieszka Mykowiecka, Anna Muszewska, Pawel Górecki. 79-83 [doi]
- TADeus-a tool for clinical interpretation of structural variants modifying chromatin organizationBarbara Poszewiecka, Pawel Stankiewicz, Tomasz Gambin, Anna Gambin. 84-87 [doi]
- AAnchor: CNN guided detection of anchor amino acids in high resolution cryo-EM density mapsMark Rozanov, Haim J. Wolfson. 88-91 [doi]
- The Longest Common Exemplar Subsequence ProblemShu Zhang, Ruizhi Wang, Daming Zhu, Haitao Jiang, Haodi Feng, Jiong Guo, Xiaowen Liu. 92-95 [doi]
- Renal cell carcinoma classification: a case study of pitfalls associated with metabolic landscape analysisKrzysztof Gogolewski, Marcin Kostecki, Anna Gambin. 96-101 [doi]
- Integrating Gene Expression Data and Pathway Knowledge for In Silico Hypothesis Generation with IMPResYuexu Jiang, Duolin Wang, Dong Xu 0002, Trupti Joshi. 102-107 [doi]
- Virus-host Association Prediction by using Kernelized Logistic Matrix Factorization on Heterogeneous NetworksDan Liu, Xiaohua Hu, Xiaohua Hu, Xingpeng Jiang. 108-113 [doi]
- Fusing heterogeneous genomic data to discover cancer progression related dynamic modulesXiaoke Ma, Penggang Sun. 114-121 [doi]
- Sample Size and Reproducibility of Gene Set AnalysisFarhad Maleki, Katie Ovens, Ian McQuillan, Anthony J. Kusalik. 122-129 [doi]
- Analysis of Gene Expression Data of RPL10 Mutant T-Cell Leukemia by SEMsubPADaniele Pepe, Kim De Keersmaecker. 130-135 [doi]
- Aligning Multiple PPI Networks with Representation Learning on NetworksBo Song, Jianliang Gao, Hongliang Du, Zheng Chen, Xiaohua Hu. 136-141 [doi]
- Genome-Wide miRNA Expression Alterations in Nucleus Accumbens Provide Insights into Chronic Stress and Treatment in DepressionWeichen Song, Guan Ning Lin, Sufang Peng, Yanhua Zhang, Yifeng Shen, Huafang Li, Shunying Yu. 142-148 [doi]
- Identifying Representative Network Motifs for Inferring Higher-order Structure of Biological NetworksTao Wang, Jiajie Peng, Yadong Wang, Jin Chen. 149-156 [doi]
- BioRank: A Similarity Assessment Method for Single Cell ClusteringYunpei Xu, Hong-Dong Li, Yi Pan 0001, Feng Luo, Jianxin Wang. 157-162 [doi]
- Integrating Protein Localization with Automated Signaling Pathway ReconstructionIbrahim Youssef, Jeffrey Law, Anna M. Ritz. 163-168 [doi]
- A Disease-related Gene Mining Method Based On Weakly Supervised Learning ModelHan Zhang, Xueting Huo, Xia Guo, Xin Su, Xiongwen Quan, Chen Jin. 169-174 [doi]
- LncRNA-disease association prediction based on neighborhood information aggregation in neural networkHongjie Chen, Xun Wang, Xuan Zhang, Xiangxiang Zeng, Tao Song, Alfonso Rodríguez-Patón. 175-178 [doi]
- Calibration of Rule-Based Stochastic Biochemical Models using Statistical Model CheckingArfeen Khalid, Sumit Kumar Jha 0001. 179-184 [doi]
- Scrutinizing functional interaction networks from RNA-binding proteins to their targets in cancerSajal Kumar, Hua Zhong, Ruby Sharma, Yiyi Li, Mingzhou Song. 185-190 [doi]
- PC-SENE: A node embedding based method for protein complex detectionXiaoxia Liu, Zhihao Yang, Shengtian Sang, Lei Wang, Yin Zhang, Hongfei Lin, Bo Xu, Yijia Zhang, Liang Yang, Kan Xu, Jian Wang. 191-192 [doi]
- Prediction of Long Non-coding RNA-protein Interaction through Kernel Soft-neighborhood SimilarityYingiun Ma, Limin Yu, Tingting He, Xiaohua Hu, Xingpeng Jiang. 193-196 [doi]
- Kernel Soft-neighborhood Network Fusion for MiRNA-Disease Interaction PredictionYingiun Ma, Leixin Ge, Yuanyuan Ma, Xingpeng Jiang, Tingting He, Xiaohua Hu. 197-200 [doi]
- Fast and Accurate Genome-Scale Identification of DNA-Binding SitesDavid Martin, Vincent Maillol, Eric Rivals. 201-205 [doi]
- High-order Organization of Weighted Microbial Interaction NetworkXianjun Shen, Xue Gong, Xingpeng Jiang, JinCai Yang, Tingting He, Xiaohua Hu. 206-209 [doi]
- Protein Complexes Detection Based on Global Network Representation LearningBo Xu, Kun Li, Xiaoxia Liu, Delong Liu, Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia. 210-213 [doi]
- Centrality of cancer-related genes in human biological pathways: A graph analysis perspectivePourya Naderi Yeganeh, Erik Saule, M. Taghi Mostafavi. 214-218 [doi]
- rCANID: read Clustering and Assembly-based Novel Insertion Detection toolYilei Fu, Tao Jiang, Bo Liu, Yadong Wang. 219-226 [doi]
- Fast variation-aware read alignment with deBGA-VARAHongzhe Guo, Bo Liu, Dengfeng Guan, Yilei Fu, Yadong Wang. 227-233 [doi]
- Read cloud sequencing elucidates microbiome dynamics in a hematopoietic cell transplant patientJoyce Kang, Benjamin Siranosian, Eli Moss, Tessa Andermann, Ami Bhatt. 234-241 [doi]
- An embedded method for gene identification in heterogenous data involving unwanted heterogeneityMeng Lu. 242-247 [doi]
- An Ensemble Feature Selection Method Based on Deep Forest for Microbiome-Wide Association StudiesQiang Zhu, Min Pan, Lei Liu, Bojing Li, Tingting He, Xingpeng Jiang, Xiaohua Hu. 248-253 [doi]
- Predicting Local Inversions Using Rectangle Clustering and Representative Rectangle PredictionShenglong Zhu, Scott J. Emrich, Danny Z. Chen. 254-259 [doi]
- A meta-analysis portal for human breast cancer transcriptomics data: BreastCancerVisPetronela Buiga, Jamie Soul, Jean-Marc Schwartz. 260-264 [doi]
- deSPI: efficient classification of metagenomics reads with lightweight de Bruijn graph-based reference indexingDengfeng Guan, Bo Liu, Yadong Wang. 265-269 [doi]
- DeepDNA: a hybrid convolutional and recurrent neural network for compressing human mitochondrial genomesRongjie Wang, Yang Bai, Yan-Shuo Chu, Zhenxing Wang, Yongtian Wang, Mingrui Sun, Junyi Li, Tianyi Zang, Yadong Wang. 270-274 [doi]
- Chrysanthemum Abnormal Petal Type Classification using Random Forest and Over-samplingPeisen Yuan, Shougang Ren, Huanliang Xu, Jin Chen. 275-278 [doi]
- The Phylogenetic Tree based Deep Forest for Metagenomic Data ClassificationQiang Zhu, Qing Zhu, Min Pan, Xingpeng Jiang, Xiaohua Hu, Tingting He. 279-282 [doi]
- Determining Dose-Response Characteristics of Molecular Perturbations in Whole-Organism Assays Using Biological Imaging and Machine LearningDaniel Asarnow, Rahul Singh. 283-290 [doi]
- New visualization of dynamical flexibility of N-Glycans: Umbrella Visualization in UnityMolCamille Besancon, Alexandre Guillot, Sébastien Blaise, Manuel Dauchez, Nicolas Belloy, Jessica Prevoteau-Jonquet, Stéphanie Baud. 291-298 [doi]
- Toxicity Prediction Using Pre-trained AutoencoderMykola Galushka, Fiona Browne, Maurice D. Mulvenna, Raymond Bond, Gaye Lightbody. 299-304 [doi]
- Drug-Protein-Disease Association Prediction and Drug Repositioning Based on Tensor DecompositionRan Wang, Shuai Li, Man Hon Wong, Kwong-Sak Leung. 305-312 [doi]
- Layered Multistep Bidirectional Long Short-Term Memory Networks for Biomedical Word Sense DisambiguationDaniel Bis, Canlin Zhang, Xiuwen Liu, Zhe He 0001. 313-320 [doi]
- GPU-accelerated CellProfilerImen Chakroun, Nick Michiels, Roel Wuyts. 321-326 [doi]
- Optimizing U-Net to Segment Left Ventricle from Magnetic Resonance ImagingSadegh Charmchi, Kumaradevan Punithakumar, Pierre Boulanger. 327-332 [doi]
- GrantExtractor: A Winning System for Extracting Grant Support Information from Biomedical LiteratureSuyang Dai, Zihan Zhang, Wenxuan Zuo, Xiaodi Huang, Shanfeng Zhu. 333-340 [doi]
- ParLECH: Parallel Long-Read Error Correction with HadoopArghya Kusum Das, Kisung Lee, Seung-Jong Park. 341-348 [doi]
- Accelerated Super-resolution MR Image Reconstruction via a 3D Densely Connected Deep Convolutional Neural NetworkJinglong Du, Lulu Wang, Ali Gholipour, Zhongshi He, Yuanyuan Jia. 349-355 [doi]
- Fast Multi-Task SCCA Learning with Feature Selection for Multi-Modal Brain Imaging GeneticsLei Du, Kefei Liu 0001, Xiaohui Yao, Shannon L. Risacher, Junwei Han, Lei Guo 0002, Andrew J. Saykin, Li Shen 0001. 356-361 [doi]
- Hierarchical Multi-layer Transfer Learning Model for Biomedical Question AnsweringYongping Du, Bingbing Pei, Xiaozheng Zhao, Junzhong Ji. 362-367 [doi]
- Region level Bi-directional Deep Learning Framework for EEG-based Image ClassificationAhmed Fares, Sheng-hua Zhong, Jianmin Jiang. 368-373 [doi]
- Generation of Synthetic Electronic Medical Record TextJiaqi Guan, Runzhe Li, Sheng Yu, Xuegong Zhang. 374-380 [doi]
- Cox-PASNet: Pathway-based Sparse Deep Neural Network for Survival AnalysisJie Hao, Youngsoon Kim, Tejaswini Mallavarapu, Jung Hun Oh, Mingon Kang. 381-386 [doi]
- Virtual Grid Engine: Accelerating thousands of omics sample analyses using large-scale supercomputersSatoshi Ito, Masaaki Yadome, Tatsuo Nishiki, Shigeru Ishiduki, Hikaru Inoue, Rui Yamaguchi, Satoru Miyano. 387-392 [doi]
- HTRgene: Integrating Multiple Heterogeneous Time-series Data to Investigate Cold and Heat Stress Response Signaling Genes in ArabidopsisHongryul Ahn, Inuk Jung, Heejoon Chae, Dongwon Kang, Woosuk Jung, Sun Kim. 393-398 [doi]
- Identifying stress-related genes and predicting stress types in Arabidopsis using logical correlation layer and CMCL loss through time-series dataDongwon Kang, Hongryul Ahn, Sangseon Lee, Chai-Jin Lee, Jihye Hur, Woosuk Jung, Sun Kim. 399-404 [doi]
- A Graph-Theoretic Approach for Identifying Bacterial Inter-correlations and Functional Pathways in Microbiome DataSuyeon Kim, Ishwor Thapa, Hesham H. Ali. 405-411 [doi]
- Task-Independent EEG Identification via Low-Rank Matrix DecompositionXianghao Kong, Wanzeng Kong, Qiaonan Fan, Qibin Zhao, Andrzej Cichocki. 412-419 [doi]
- Pattern Discovery for Wide-Window Open Information Extraction in Biomedical LiteratureQi Li 0012, Xuan Wang 0008, Yu Zhang 0044, Fei Ling, Cathy H. Wu, Jiawei Han 0001. 420-427 [doi]
- A Hybrid Deep Learning Framework for Bacterial Named Entity RecognitionXusheng Li, Xiaoyan Wang, Ran Zhong, Duo Zhong, Tingting He, Xiaohua Hu, Xingpeng Jiang. 428-433 [doi]
- A Unified Model for Robust Differential Expression Analysis of RNA-Seq DataKefei Liu, Li Shen, Hui Jian. 437-442 [doi]
- Improved V-Net Based Image Segmentation for 3D Neuron ReconstructionMin Liu, Huiqiong Luo, Yinghui Tan, Xueping Wang, Weixun Chen. 443-448 [doi]
- 3D Neuron Branch Points Detection in Microscopy ImagesMin Liu, Chao Wang, Weixun Chen. 449-454 [doi]
- Cell Tracking Across Noisy Image Sequences Via Faster R-CNN and Dynamic Local Graph MatchingMin Liu, Lehui Wu, Weili Qian, Yalan Liu. 455-460 [doi]
- Implementing a Portable Clinical NLP System with a Common Data Model - a Lisp PerspectiveYuan Luo, Peter Szolovits. 461-466 [doi]
- Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network ApproachLing Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang. 467-469 [doi]
- PASCL: Pathway-based Sparse Deep Clustering for Identifying Unknown Cancer SubtypesTejaswini Mallavarapu, Jie Hao, Youngsoon Kim, Jung Hun Oh, Mingon Kang. 470-475 [doi]
- Discovering COPD phenotyping via simultaneous feature selection and clusteringMario Merone, Panaiotis Finamore, Claudio Pedone, Raffaele Antonelli Incalzi, Giulio Iannello, Paolo Soda. 476-481 [doi]
- RADAR: Representation Learning across Disease Information Networks for Similar Disease DetectionRuiqi Qin, Lei Duan, Huiru Zheng, Jesse Li-Ling, Kaiwen Song, Xuan Lan. 482-487 [doi]
- *Thomas Brox Rost, Christine Raaen Tvedt, Haldor Husby, Ingrid Andas Berg, Øystein Nytrø. 488-495 [doi]
- Drug Target Interaction Prediction with Non-random Missing LabelsSheng Ni, Chen Lin, Xiangxiang Zeng, Yun Liang 0003. 496-501 [doi]
- A Deep Learning Approach to Handling Temporal Variation in Chronic Obstructive Pulmonary Disease ProgressionChunlei Tang, Joseph M. Plasek, Haohan Zhang, Yun Xiong, David W. Bates, Li Zhou. 502-509 [doi]
- OLIVER: A Tool for Visual Data Analysis on Longitudinal Plant Phenomics DataOliver L. Tessmer, David M. Kramer 0001, Jin Chen. 510-517 [doi]
- Predicting candidate disease-related lncRNAs based on network random walkYongtian Wang, Liran Juan, Jiajie Peng, Tianyi Zang, Yadong Wang. 524-531 [doi]
- Deep Learning based Fetal Middle Cerebral Artery Segmentation in Large-scale Ultrasound ImagesShuo Wang, Yang Hua, Yunyun Cao, Tao Song, Zhengui Xue, Xiaoping Gong, Guanjie Wang, Ruhui Ma, Haibing Guan. 532-539 [doi]
- PENNER: Pattern-enhanced Nested Named Entity Recognition in Biomedical LiteratureXuan Wang 0008, Yu Zhang 0044, Qi Li 0012, Cathy H. Wu, Jiawei Han 0001. 540-547 [doi]
- Predicting Disease-related Associations by Heterogeneous Network EmbeddingYun Xiong, Lu Ruan, Mengjie Guo, Chunlei Tang, Xiangnan Kong, Yangyong Zhu, Wei Wang. 548-555 [doi]
- Improve Diversity-oriented Biomedical Information Retrieval using Supervised Query ExpansionBo Xu 0008, Hongfei Lin, Liang Yang 0003, Kan Xu, Yijia Zhang, Dongyu Zhang, Zhihao Yang, Jian Wang, Yuan Lin 0001, Fuliang Yin. 556-559 [doi]
- Full-attention Based Drug Drug Interaction Extraction Exploiting User-generated ContentBo Xu, Xiufeng Shi, Zhehuan Zhao, Wei Zheng, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia. 560-565 [doi]
- Deep Subspace Similarity Fusion for the Prediction of Cancer SubtypesBo Yang, Shuhui Liu, Shanmin Pang, Chenpai Pang, Xuequn Shang. 566-571 [doi]
- Weighted matrix factorization based data fusion for predicting lncRNA-disease associationsGuoxian Yu, Yuehui Wang, Jun Wang, Guangyuan Fu, Maozu Guo, Carlotta Domeniconi. 572-577 [doi]
- Hypergraph regularized NMF by L2, 1-norm for Clustering and Com-abnormal Expression Genes SelectionNa Yu, Ying-Lian Gao, Jin-Xing Liu, Juan Wang, Junliang Shang. 578-582 [doi]
- A Deep Learning Framework for Identifying Essential Proteins Based on Protein-Protein Interaction Network and Gene Expression DataMin Zeng, Min Li, Zhihui Fei, Fang-Xiang Wu, Yaohang Li, Yi Pan. 583-588 [doi]
- Knowledge Base Commons (KBCommons) v1.0: A multi OMICS' web-based data integration framework for biological discoveriesShuai Zeng, Zhen Lyu, Siva Ratna Kumari Narisetti, Dong Xu, Trupti Joshi. 589-594 [doi]
- Multimodal Deep Representation Learning for Protein-Protein Interaction NetworksDa Zhang, Mansur R. Kabuka. 595-602 [doi]
- Inferring Microbial Communities for City Scale Metagenomics Using Neural NetworksGuangyu Zhou, Jyun-Yu Jiang, Chelsea J.-T. Ju, Wei Wang. 603-608 [doi]
- Actor-Critic Reinforcement Learning for Automatic Left Atrial Appendage SegmentationWalid Abdullah Al, Il Dong Yun. 609-612 [doi]
- Forecasting depressive relapse in Bipolar Disorder from clinical dataRenato Borges-Junior, Rogerio Salvini, Andrew A. Nierenberg, Gary S. Sachs, Beny Lafer, Rodrigo S. Dias. 613-616 [doi]
- SeDIE: A Semantic-Driven Engine for Integration of Healthcare DataHoussein Dhayne, Rima Kilany, Rafiqul Haque, Yehia Taher. 617-622 [doi]
- Using Whole Knee Cartilage Damage Index to Predict Knee Osteoarthritis: A Two-year Longitudinal StudyYaodong Du, Juan Shan, Rania Almajalid, Tomer Alon, Ming Zhang. 623-628 [doi]
- Autoencoders as Weight Initialization of Deep Classification Networks Applied to Papillary Thyroid CarcinomaMafalda Falcao Ferreira, Rui Camacho, Luís Filipe Teixeira. 629-632 [doi]
- A Multi-scale Pyramid of Fully Convolutional Networks for Automatic Cell DetectionJiang Gu, Yichen Zhu, Bohong Yang, Jingkai Jia, Juanjuan Wang, Jian Yang, Wenqiang Zhang. 633-636 [doi]
- Joint Prediction of Branchpoint and Splice Acceptor Sites in pre-mRNA Transcripts Using Sequence to Sequence NetworksSanket Rajan Gupte, Rajgopal Srinivasan. 637-641 [doi]
- Fiducial marker detection via deep learning approach for electron tomographyYu Hao, Renmin Han, Xiaohua Wan, Fa Zhang, Shiwei Sun. 642-645 [doi]
- Convolutional Gated Recurrent Units for Medical Relation ClassificationBin He, Yi Guan, Rui Dai. 646-650 [doi]
- Biomedical Event Trigger Detection Based on BiLSTM Integrating Attention Mechanism and Sentence VectorXinyu He, Lishuang Li, Jia Wan, Dingxin Song, Jun Meng, Zhanjie Wang. 651-654 [doi]
- Overlapping Community Detection in Multi-view Brain NetworkLing Huang, Chang-Dong Wang, Hong-Yang Chao. 655-658 [doi]
- Incorporating Syntactic Dependencies into Semantic Word Vector Model for Medical Text ProcessingMaia Iyer, Christopher Zou, Xiao Luo. 659-664 [doi]
- Prediction of transposable elements evolution using tabu searchLingling Jin, Ian McQuillan. 665-670 [doi]
- Leveraging Disease Progression Learning for Medical Image RecognitionQicheng Lao, Thomas Fevens, Boyu Wang. 671-675 [doi]
- Paean: A parallel transcriptome quantification tool combining gene expression and alternative splicing events using GPUJiefu Li, Jiawen Guan, Jiaqiang Qian, Yanghan Feng, Ruijie Yao, Rui Fan, Zefeng Wang. 676-679 [doi]
- A multi-task learning based approach to biomedical entity relation extractionQingqing Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang. 680-682 [doi]
- Early Prediction of Acute Kidney Injury in Critical Care Setting Using Clinical NotesYikuan Li, Liang Yao, Chengsheng Mao, Anand Srivastava, Xiaoqian Jiang, Yuan Luo. 683-686 [doi]
- SURI: Feature Selection Based on Unique Relevant Information for Health DataShiyu Liu, Jia Yao, Chongyu Zhou, Mehul Motani. 687-692 [doi]
- A method for improving the reliability of causal inference from large-scale data in biomedicineYitao Liu, Xiaoqing Lyu, Haihua Xie, Xiaotong Yan, Bei Wang, Zhi Tang. 693-696 [doi]
- Deep reinforcement learning from error-related potentials via an EEG-based brain-computer interfaceTian-jian Luo, Ya-chao Fan, Ji-tu Lv, Changle Zhou. 697-701 [doi]
- Multi-view Factorization AutoEncoder with Network Constraints for Multi-omic Integrative AnalysisTianle Ma, Aidong Zhang. 702-707 [doi]
- Regression Models and Ranking Method for p53 Inhibitor Candidates Using Machine LearningHaruka Motohashi, Tatsuro Teraoka, Shin Aoki, Hayato Ohwada. 708-712 [doi]
- Modeling biological complexity using Biology System Description Language (BiSDL)F. Muggianu, Alfredo Benso, Roberta Bardini, E. Hu, Gianfranco Politano, Stefano Di Carlo. 713-717 [doi]
- SORA: Scalable Overlap-graph Reduction Algorithms for Genome Assembly using Apache Spark in the CloudAlexander J. Paul, Dylan Lawrence, Myoungkyu Song, Seung-Hwan Lim, Chongle Pan, Tae-Hyuk Ahn. 718-723 [doi]
- Deep Homography Based Localization on Videos of Endoscopic CapsulesGil Pinheiro, Paulo Jorge Simães Coelho, Marta Salgado, Hélder P. Oliveira, António Cunha. 724-727 [doi]
- A System for Learning Atoms Based on Long Short-Term Memory Recurrent Neural NetworksZhe Quan, Xuan Lin, Zhi-jie Wang, Yan Liu, Fan Wang, Kenli Li. 728-733 [doi]
- Automatic hyperparameter selection in AutodockHojjat Rakhshani, Lhassane Idoumghar, Julien Lepagnot, Mathieu Brévilliers, Edward Keedwell. 734-738 [doi]
- Detecting the Scope of Negation and Speculation in Biomedical Texts by Using Recursive Neural NetworkYafeng Ren, Hao Fei, Qiong Peng. 739-742 [doi]
- Recognising Named Entity of Medical Imaging Procedures in Clinical NotesWei Ruan, Won-Sook Lee. 743-746 [doi]
- Boundary Detection by Determining the Difference of Classification Probabilities of Sequences: Topic Segmentation of Clinical NotesWei Ruan, Won-Sook Lee. 747-750 [doi]
- A Knowledge Graph based Bidirectional Recurrent Neural Network Method for Literature-based DiscoveryShengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang. 751-752 [doi]
- Phylogenetic Reconstructions Using an Indicator-Based Bat Algorithm for Multicore ProcessorsSergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. 753-756 [doi]
- Drug2Vec: Knowledge-aware Feature-driven Method for Drug Representation LearningYing Shen, Kaiqi Yuan, Yaliang Li, Buzhou Tang, Min Yang, Nan Du, Kai Lei. 757-800 [doi]
- Efficient and Private Set Intersection of Human GenomesLiyan Shen, Xiaojun Chen 0004, Dakui Wang, Binxing Fang, Ye Dong. 761-764 [doi]
- Hierarchical Recurrent Convolutional Neural Network for Chemical-protein Relation Extraction from Biomedical LiteratureCong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang. 765-766 [doi]
- A Weak Supervised Learning Method for Essential Protein Detection Based on STRING Database and Learning RepresentationZhizheng Wang, Yuanyuan Sun, Yawen Guan, Yibin Zhang, Liang Yang, Kan Xu, Yijia Zhang, Hongfei Lin. 767-770 [doi]
- Mmalloc: A Dynamic Memory Management on Many-core Coprocessor for the Acceleration of Storage-intensive Bioinformatics ApplicationZihao Wang, Mingzhe Zhang, Jingrong Zhang, Rui Yan, Xiaohua Wan, Zhiyong Liu, Fa Zhang, Xuefeng Cui. 771-774 [doi]
- A Network-on-Chip Accelerator for Genome Variant AnalysisLing Wang 0005, Yadong Wang. 775-779 [doi]
- Convolutional Neural Network with Element-wise Filters to Extract Hierarchical Topological Features for Brain NetworksXinying Xing, Junzhong Ji, Yao Yao. 780-783 [doi]
- Patient-Specific Heartbeat Classification Based on I-Vector Adapted Deep Neural NetworksSean Shensheng Xu, Man-Wai Mak, Chi-Chung Cheung. 784-787 [doi]
- Prediction of DTIs for high-dimensional and class-imbalanced data based on CGANKang Yang, Zhongnan Zhang, Song He, Xiaochen Bo. 788-791 [doi]
- CoDe-DTI: Collaborative Deep Learning-based Drug-Target Interaction PredictionNobuaki Yasuo, Yusuke Nakashima, Masakazu Sekijima. 792-797 [doi]
- Prediction of Drug-Disease Associations and Their Effects by Signed Network-Based Nonnegative Matrix FactorizationWen Zhang, Feng Huang, Xiang Yue, Xiaoting Lu, Weitai Yang, Zhishuai Li, Feng Liu. 798-802 [doi]
- HNGRNMF: Heterogeneous Network-based Graph Regularized Nonnegative Matrix Factorization for predicting events of microbe-disease associationsWen Zhang 0008, Xiaoting Lu, Weitai Yang, Feng Huang, Binlu Wang, Alan Wang, Qi Zhao. 803-807 [doi]
- Exploring Deep Learning-based Approaches for Predicting Concept Names in SNOMED CTFengbo Zheng, Licong Cui. 808-813 [doi]
- Curvilinear Structure Enhancement by Multiscale Top-Hat Tensor in 2D/3D ImagesShuaa S. Alharbi, Cigdem Sazak, Carl J. Nelson, Boguslaw Obara. 814-822 [doi]
- Early Sepsis Recognition Based on Ear Localization using Infrared ThermographyHasanain Al-Sadr, Mihail Popescu, James M. Keller. 823-830 [doi]
- HASS: High Accuracy Spike Sorting with Wavelet Package Decomposition and Mutual InformationYao Chen, Libo Huang, Jiong He, Kunyao Zhao, Ruichu Cai, Zhifeng Hao. 831-838 [doi]
- Heterogeneous Information Network Based Clustering for Categorizations of Traditional Chinese Medicine FormulaXintian Chen, Chunyang Ruan, Yanchun Zhang, Huijuan Chen. 839-846 [doi]
- Radiomics for Predicting CyberKnife response in acoustic neuroma: a pilot studyNatascha Claudia D'Amico, Rosa Sicilia, Ermanno Cordelli, Giovanni Valbusa, Enzo Grossi, Isa Bossi Zanetti, Giancarlo Beltramo, Deborah Fazzini, Giuseppe Scotti, Giulio Iannello, Paolo Soda. 847-852 [doi]
- Exploring Disease Similarity by Integrating Multiple Data SourcesLei Deng, Danyi Ye, Junmin Zhao, Jingpu Zhang. 853-858 [doi]
- Inter/Intra-Constraints Optimization for Fast Vessel Enhancement in X-ray Angiographic Image SequenceChenbing Du, Shuang Song, Danni Ai, Hong Song, Yong Huang, Yongtian Wang, Jian Yang. 859-863 [doi]
- Disease Inference with Symptom Extraction and Bidirectional Recurrent Neural NetworkDonglin Guo, Min Li, Ying Yu, Yaohang Li, Guihua Duan, Fang-Xiang Wu, Jianxin Wang. 864-868 [doi]
- Statistical Modeling of Short-Tandem Repeat Capillary Electrophoresis ProfilesSlim Karkar, Lauren E. Alfonse, Catherine M. Grgicak, Desmond S. Lun. 869-876 [doi]
- Automated framework to reconstruct 3D model of cardiac Z-disk: an image processing approachAfshin Khadangi, Eric Hanssen, Vijay Rajagopal. 877-884 [doi]
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- Neural Precision Medicine by Mining Implicit Treatment ConceptsCanjia Li, Ben He, Le Sun, Yingfei Sun. 893-898 [doi]
- A Novel Radiogenomics Framework for Genomic and Image Feature Correlation using Deep LearningShuai Li 0001, Hongze Han, Dong Sui, Aimin Hao, Hong Qin. 899-906 [doi]
- HMIML: Hierarchical Multi-Instance Multi-Label Learning of Drosophila Embryogenesis Images Using Convolutional Neural NetworksTiange Li, Yang Yang 0030, Hong-bin Shen. 907-912 [doi]
- 1H-MRS Alzheimer Diagnosis with Boosted TreesFengmao Lv, Yuchen Li, Guowu Yang. 913-918 [doi]
- Automatic Hand Skeletal Shape Estimation from RadiographsRadu Paul Mihail, Nathan Jacobs. 919-926 [doi]
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- Fast and Accurate Recognition of Chinese Clinical Named Entities with Residual Dilated ConvolutionsJiahui Qiu, Qi Wang, Yangming Zhou, Tong Ruan, Ju Gao. 935-942 [doi]
- Detecting Novel Structural Variants In Genomes By Leveraging Parent-Child RelatednessMelissa Spence, Mario Banuelos, Roummel F. Marcia, Suzanne Sindi. 943-950 [doi]
- Multipath2vec: Predicting Pathogenic Genes via Heterogeneous Network EmbeddingBo Xu, Yu Liu, Shuo Yu, Lei Wang, Lei Liu, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia 0001. 951-956 [doi]
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- Multivariate Sleep Stage Classification using Hybrid Self-Attentive Deep Learning NetworksYe Yuan, Kebin Jia, Fenglong Ma, Guangxu Xun, Yaqing Wang, Lu Su, Aidong Zhang. 963-968 [doi]
- A Data Mining Approach for Biomarker Discovery Using Transcriptomics in EndometriosisSadia Akter, Dong Xu, Susan C. Nagel, Trupti Joshi. 969-972 [doi]
- 3D Convolutional Neural Networks Fusion Model for Lung Nodule Detection onClinical CT ScansGuitao Cao, Tiantian Huang, Kai Hou, Wenming Cao, Peng Liu, Jiawei Zhang. 973-978 [doi]
- An Adaptive Ray-Shooting Model for Terminations Detection: Applications in Neuron and Retinal Blood Vessel ImagesWeixun Chen, Min Liu, Keran Liu, Zhigang Ling. 979-982 [doi]
- Breast Cancer Classification with Electronic Medical Records Using Hierarchical Attention Bidirectional NetworksDehua Chen, Guangjun Qian, Qiao Pan. 983-988 [doi]
- Automatic Segmentation of Neonates Thermal Imaging for Evaluation of Trunk Thermal AsymmetryThyago Maia Tavares de Farias, Manoel Eusebio de Lima, Sandra da Silva Mattos, Juliana Souza S. de Araujo, Lucia Roberta D. N. Mozer, Felipe Alves Mourato. 989-992 [doi]
- Application of machine learning on colonoscopy screening records for predicting colorectal polyp recurrenceLia Harrington, Arief A. Suriawinata, Todd Mackenzie, Saeed Hassanpour. 993-998 [doi]
- IterVM: An Iterative Model for Single-Particle Cryo-EM Image Clustering Based on Variational Autoencoder and Multi-Reference AlignmentGuowei Ji, Yang Yang 0030, Hong-bin Shen. 999-1002 [doi]
- A novel study for MDD detection through task-elicited facial cuesJinlong Li, Zhenyu Liu, Zhijie Ding, Gangping Wang. 1003-1008 [doi]
- Semantic Characteristic Prediction of Pulmonary Nodules Using the Causal Discovery Based on Streaming Features AlgorithmNa Li, Jing Yang, Shuai Fang. 1009-1012 [doi]
- A PWM-Based Muscle Fatigue Detection and Recovery SystemBin Ma, Chunxiao Li, Zhaolong Wu, Yulong Huang, Ada Chaeli van der Zijp-Tan, Shaobo Tan, Dongqi Li, Ada Fong, Chandan Basetty, Glen M. Borchert, Jingshan Huang. 1013-1016 [doi]
- Deepwound: Automated Postoperative Wound Assessment and Surgical Site Surveillance through Convolutional Neural NetworksVarun N. Shenoy, Elizabeth Foster, Lauren Aalami, Bakar Majeed, Oliver O. Aalami. 1017-1021 [doi]
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- Automatic 3D Neuron Tracing Based on Terminations DetectionChao Wang, Weixun Chen, Min Liu, Zhi Zhou. 1027-1030 [doi]
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- Retinal Vessel Segmentation via A Coarse-to-fine Convolutional Neural NetworkHaiying Xia, Ruibin Zhuge, Haisheng Li. 1036-1039 [doi]
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- Whole Knee Cartilage Quantification Based on Informative LocationsMing Zhang, Juan Shan, Yaodong Du, Rania Almajalid, Iris Su, Joseph DelVecchio. 1049-1053 [doi]
- Temporal sequence alignment in electronic health records for computable patient representationMing Huang, Maryam Zolnoori, Nilay D. Shah, Lixia Yao. 1054-1061 [doi]
- Factors Influencing Epidural Anesthesia for Cesarean Section OutcomeEva K. Lee, Haozheng Tian, Xin Wei, Jinha Lee, K. Doug Smith, John Neeld, Alan R. Kaplan. 1062-1069 [doi]
- A General Framework for Diagnosis Prediction via Incorporating Medical Code DescriptionsFenglong Ma, Yaqing Wang, Houping Xiao, Ye Yuan, Radha Chitta, Jing Zhou, Jing Gao. 1070-1075 [doi]
- OpenHI - An open source framework for annotating histopathological imagePargorn Puttapirat, Haichuan Zhang, Yuchen Lian, Chunbao Wang, Xiangrong Zhang, Lixia Yao, Chen Li. 1076-1082 [doi]
- Detecting Serendipitous Drug Usage in Social Media with Deep Neural Network ModelsBoshu Ru, Dingcheng Li, Lixia Yao. 1083-1090 [doi]
- A Deep Predictive Model in Healthcare for InpatientsXiao Xu, Ying Wang, Tao Jin, Jianmin Wang. 1091-1098 [doi]
- A Wearable Sensor Design for Cardiorespiratory Signals Acquisition Based on PVDF SensorsMourad Adnane, Zhongwei Jiang. 1099-1102 [doi]
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- The lookAfterRisk Project: Dynamic Cardiovascular Risk Assessment based on Remote Monitoring SolutionsSimão Paredes, Jorge Henriques, Teresa Rocha, Paulo de Carvalho, João Morais, Luis Santos, Rita Carvalho. 1122-1125 [doi]
- Understanding Markush Structures in Chemistry Documents With Deep LearningPenghui Sun, Xiaoqing Lyu, Xin Li, Bei Wang, Xiaohan Yi, Zhi Tang. 1126-1129 [doi]
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- A New Method for Brain Death Diagnosis Based on Phase Synchronization Analysis With EEGJianhai Zhang, Jianting Cao, Na Zhang, Wanzeng Kong, Jiajia Tang, Yong Peng. 1135-1138 [doi]
- A tree-search method for single-channel fetal QRS complexes detection in fetal heart rate monitoringWei Zhong, Zhongping Cao, Wen Ding, Xuemei Guo, Guoli Wang. 1139-1142 [doi]
- Characterizing Design Patterns of EHR-Driven Phenotype Extraction AlgorithmsYizhen Zhong, Luke V. Rasmussen, Yu Deng, Jennifer A. Pacheco, Maureen E. Smith, Justin Starren, Wei-Qi Wei, Peter Speltz, Joshua C. Denny, Nephi Walton, George Hripcsak, Christopher G. Chute, Yuan Luo. 1143-1146 [doi]
- Optimization of Genomics Analysis Pipeline for Scalable Performance in a Cloud EnvironmentCarlos H. A. Costa, Claudia Misale, Frank Liu, Marcio Silva, Hubertus Franke, Paul Crumley, Bruce DrAmora. 1147-1154 [doi]
- Domain-Aware Abstractive Text Summarization for Medical DocumentsPaul Gigioli, Nikhita Sagar, Joseph Voyles, Anand S. Rao. 1155-1162 [doi]
- Learning Latent Patterns in Molecular Data for Explainable Drug Side Effects PredictionPengwei Hu, Zhu-Hong You, Tiantian He, Shaochun Li, Shuhang Gu, Keith C. C. Chan. 1163-1169 [doi]
- Performance Evaluation of IMP: A Rapid Secondary Analysis Pipeline for NGS DataShun Wang, Wenxian Yang, Xiang Zhang, Rongshan Yu. 1170-1176 [doi]
- Improving Coding Efficiency of MPEG-G Standard Using Context-Based Arithmetic CodingWenxian Yang, Yating Lin, Shiyao Wu, Rongshan Yu. 1177-1183 [doi]
- Content-bootstrapped Collaborative Filtering for Medical Article RecommendationsWenbin Zhang, Jianwu Wang. 1184-1188 [doi]
- Supervised Nonnegative Matrix Factorization to Predict ICU Mortality RiskGuoqing Chao, Chengsheng Mao, Fei Wang, Yuan Zhao, Yuan Luo. 1189-1194 [doi]
- COSA: Contextualized and Objective System to Support ADHD DiagnosisYiqiang Chen, Yingwei Zhang, Xinlong Jiang, Xin Zeng, Ruizhe Sun, Hanchao Yu. 1195-1202 [doi]
- Collaborative Filtering based Recommendation Algorithm for Recommending Active Molecules for Protein TargetsJun Ma, Hongxin An, Ruisheng Zhang, Rongjing Hu. 1203-1208 [doi]
- Deep Generative Classifiers for Thoracic Disease Diagnosis with Chest X-ray ImagesChengsheng Mao, Liang Yao, Yiheng Pan, Yuan Luo, Zexian Zeng. 1209-1214 [doi]
- Protein Network Analysis by the Interaction Force between Protein MoleculesMengjia Shen, Zhixin Ma, ZhiCheng Ma, Shibo Yang. 1215-1220 [doi]
- Unconscious Emotion Recognition based on Multi-scale Sample EntropyYanjing Shi, Xiangwei Zheng, Tiantian Li. 1221-1226 [doi]
- Relationship between personality and gait: predicting personality with gait featuresJiumo Sun, Peiqi Wu, Yali Shen, Zhixin Yang, Hualiang Li, Yuzhong Liu, Tingshao Zhu, Li Li, Kai Zhang, Min Chen. 1227-1231 [doi]
- Estimation of Spatial-Temporal Gait Parameters based on the Fusion of Inertial and Film-Pressure SignalsCheng Wang, Xiangdong Wang, Zhou Long, Tian Tian, Mingming Gao, Xiaoping Yun, Yueliang Qian, Jintao Li. 1232-1239 [doi]
- EEG Emotion Recognition Using Dynamical Graph Convolutional Neural Networks and Broad Learning SystemXue-Han Wang, Tong Zhang, Xiang-min Xu, Long Chen 0001, Xiao-Fen Xing, C. L. Philip Chen. 1240-1244 [doi]
- Attention-Based Recurrent Multi-Channel Neural Network for Influenza Epidemic PredictionBofeng Fu, Yaodong Yang, Yu Ma, Jianye Hao, Siqi Chen, Shuang Liu, Tiegang Li, Zhenyu Liao, Xianglei Zhu. 1245-1248 [doi]
- Identification of lncRNA-disease association using bi-random walksYiqun Gao, Jialu Hu, Xuequn Shang. 1249-1255 [doi]
- A Novel Method for Identifying Alzheimer's Disease-related ProteinsYang Hu, Jun Zhang, Tianyi Zhao, Liang Cheng 0006, Tianyi Zang. 1256-1261 [doi]
- Automatic Acceptance Prediction for Answers in Online Healthcare CommunityQianlong Liu, Kangenbei Liao, Zhongyu Wei. 1262-1265 [doi]
- TSGOE: A web tool for tissue-specific gene ontology enrichmentJiajie Peng, Guilin Lu, Hansheng Xue, Tao Wang, Xuequn Shang. 1266-1269 [doi]
- Creation of Unambiguous Centralized Knowledge Base from UMLS MetathesaurusVatsal Shah, Dr. Binni Shah, Raxit Goswami, Saket Kumar, Chetan Moradiya. 1270-1276 [doi]
- Speeding up Collective Cell Migration Using Deep Reinforcement LearningTian Gan, Yaodong Yang, Jianye Hao, Zhenyu Liao, Xianglei Zhu. 1277-1280 [doi]
- Identifying Candidate Diseases-related Metabolites Based on Disease SimilarityYongtian Wang, Liran Juan, Chunpu Liu, Tianyi Zang, Yadong Wang. 1281-1285 [doi]
- Exploring DNA Methylation Data of Lung Cancer Samples with Variational AutoencodersZhenxing Wang, Yadong Wang. 1286-1289 [doi]
- ProbPFP: A Multiple Sequence Alignment Algorithm Combining Partition Function and Hidden Markov Model with Particle Swarm OptimizationQing Zhan, Nan Wang, Shuilin Jin, Renjie Tan, Qinghua Jiang, Yadong Wang. 1290-1295 [doi]
- Two-step Random Walk Algorithm to Identify Cancer Genes Based on Various Biological DataWenxiang Zhang, Xiujuan Lei. 1296-1301 [doi]
- Leveraging Association Rule Mining to Detect Pathophysiological Mechanisms of Chronic Kidney Disease Complicated by Metabolic SyndromeSu-Yuan Peng, Yadan Fan, Liwei Wang, Andrew Wen, Xusheng Liu, Hongfang Liu, Feichen Shen. 1302-1309 [doi]
- Annotating Cohort Data Elements with OHDSI Common Data Model to Promote Research ReproducibilityYiqing Zhao, Yanshan Wang, Henry Wang, Benjamin Yan, Feichen Shen, Kevin J. Peterson, Walter A. Rocca, Jennifer St Sauver, Hongfang Liu. 1310-1317 [doi]
- Protein Regulating Network towards Tonifying Primal Qi Delivered by GinsengGuang Zheng, Hao Liu. 1318-1322 [doi]
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- Using Deep Learning to Identify Cell and Particle in Live-Cell Time-lapse ImagesHui-Jun Cheng, Chun-Yuan Lin, Cheng-Xian Wu, Che-Lun Hung, Wei-Hsiang Chen, Chuan Yi Tang. 1327-1331 [doi]
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- *Yin-Te Tsai. 1338-1342 [doi]
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- Estimating Daclizumab effects in Multiple Sclerosis using Stochastic Symmetric NetsSimone Pernice, Marco Beccuti, Pietro Do', Marzio Pennisi, Francesco Pappalardo 0001. 1393-1400 [doi]
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- Improve Chinese Clinical Named Entity Recognition Performance by Using the Graphical and Phonetic FeatureYifei Wang, Sophia Ananiadou, Jun'ichi Tsujii. 1582-1586 [doi]
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- Topological data analysis can extract subgroups with high incidence rates of Type 2 diabetesHyung-Sun Kim, Changwoo Yi, Yongkang Kim, Uhnmee Park, Woong Kook, Hyuk Kim, Taesung Park. 1758 [doi]
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