2009
- Ke-Shiuan Lynn, Li-Lan Li, Yen-Ju Lin, Chiuen-Huei Wang, Shu-Hui Sheng, Ju-Hwa Lin, Wayne Liao, Wen-Lian Hsu, Wen-Harn Pan. A neural network model for constructing endophenotypes of common complex diseases: an application to male young-onset hypertension microarray data. bioinformatics, 25(8):981-988, 2009. [doi]
- Allan Lo, Yi-Yuan Chiu, Einar Andreas Rødland, Ping-Chiang Lyu, Ting-Yi Sung, Wen-Lian Hsu. Predicting helix-helix interactions from residue contacts in membrane proteins. bioinformatics, 25(8):996-1003, 2009. [doi]
2008
- Chia-Wei Wu, Richard Tzong-Han Tsai, Cheng-Wei Lee, Wen-Lian Hsu. Web taxonomy integration with hierarchical shrinkage algorithm and fine-grained relations. eswa, 35(4):2123-2131, 2008. [doi]
- Ryan T. K. Lin, Hong-Jie Dai, Yue-Yang Bow, Min-Yuh Day, Richard Tzong-Han Tsai, Wen-Lian Hsu. Result identification for biomedical abstracts using Conditional Random Fields. iri 2008: 122-126 [doi]
- Hong-Jie Dai, Chi-Hsin Huang, Jaimie Yi-Wen Lin, Pei-Hsuan Chou, Richard Tzong-Han Tsai, Wen-Lian Hsu. A Survey of State of the Art Biomedical Text Mining Techniques for Semantic Analysis. sutc 2008: 410-417 [doi]
- Cheng-Wei Cheng, Emily Chia-Yu Su, Jenn-Kang Hwang, Ting-Yi Sung, Wen-Lian Hsu. Predicting RNA-binding sites of proteins using support vector machines and evolutionary information. bmcbi, 9(S-12), 2008. [doi]
- Ching-Tai Chen, Ei-Wen Yang, Hung-Ju Hsu, Yi-Kun Sun, Wen-Lian Hsu, An-Suei Yang. Protease substrate site predictors derived from machine learning on multilevel substrate phage display data. bioinformatics, 24(23):2691-2697, 2008. [doi]
- Chia-Wei Wu, Richard Tzong-Han Tsai, Wen-Lian Hsu. Semi-joint Labeling for Chinese Named Entity Recognition. flairs 2008: 107-116 [doi]
- Shoba Ranganathan, Wen-Lian Hsu, Ueng-Cheng Yang, Tin Wee Tan. Emerging strengths in Asia Pacific bioinformatics. bmcbi, 9(S-12), 2008. [doi]
- Cheng-Wei Lee, Min-Yuh Day, Cheng-Lung Sung, Yi-Hsun Lee, Tian-Jian Jiang, Chia-Wei Wu, Cheng-Wei Shih, Yu-Ren Chen, Wen-Lian Hsu. Boosting Chinese Question Answering with Two Lightweight Methods: ABSPs and SCO-QAT. talip, 7(4), 2008. [doi]
- Richard Tzong-Han Tsai, Hsi-Chuan Hung, Hong-Jie Dai, Yi-Wen Lin, Wen-Lian Hsu. Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles. bmcbi, 9(S-1), 2008. [doi]
- Cheng-Lung Sung, Min-Yuh Day, Hsu-Chun Yen, Wen-Lian Hsu. A template alignment algorithm for question classification. isi 2008: 197-199 [doi]
- Chorng-Shyong Ong, Min-Yuh Day, Wen-Lian Hsu. Development of an evaluation model for Question Answering Systems. iri 2008: 178-183 [doi]
- Cheng-Lung Sung, Cheng-Wei Lee, Hsu-Chun Yen, Wen-Lian Hsu. An alignment-based surface pattern for a question answering system. iri 2008: 172-177 [doi]
- Chun-Hung Lu, Chih-Chien Wang, Min-Yuh Day, Chorng-Shyong Ong, Wen-Lian Hsu. Using Cited by Information to Find the Context of Research Papers. isi 2008: 343-354 [doi]
- Ryan T. K. Lin, Justin Liang-Te Chiu, Hong-Jie Dai, Min-Yuh Day, Richard Tzong-Han Tsai, Wen-Lian Hsu. Biological question answering with syntactic and semantic feature matching and an improved mean reciprocal ranking measurement. iri 2008: 184-189 [doi]
- Chorng-Shyong Ong, Min-Yuh Day, Kuo-Tay Chen, Wen-Lian Hsu. User-centered evaluation of question answering systems. isi 2008: 286-287 [doi]
- Richard Tzong-Han Tsai, Hong-Jie Dai, Chi-Hsin Huang, Wen-Lian Hsu. Semi-automatic conversion of BioProp semantic annotation to PASBio annotation. bmcbi, 9(S-12), 2008. [doi]
2007
- Min-Yuh Day, Chorng-Shyong Ong, Wen-Lian Hsu. Question Classification in English-Chinese Cross-Language Question Answering: An Integrated Genetic Algorithm and Machine Learning Approach. iri 2007: 203-208 [doi]
- Min-Yuh Day, Richard Tzong-Han Tsai, Cheng-Lung Sung, Chiu-Chen Hsieh, Cheng-Wei Lee, Shih-Hung Wu, Kuen-Pin Wu, Chorng-Shyong Ong, Wen-Lian Hsu. Reference metadata extraction using a hierarchical knowledge representation framework. dss, 43(1):152-167, 2007. [doi]
- Emily Chia-Yu Su, Hua-Sheng Chiu, Allan Lo, Jenn-Kang Hwang, Ting-Yi Sung, Wen-Lian Hsu. Protein subcellular localization prediction based on compartment-specific features and structure conservation. bmcbi, 8, 2007. [doi]
- Chuan-Yih Yu, Yin-Hao Tsui, Yi-Hwa Yian, Ting-Yi Sung, Wen-Lian Hsu. The Multi-Q web server for multiplexed protein quantitation. nar, 35(Web-Server-Issue):707-712, 2007. [doi]
- Richard Tzong-Han Tsai, Wen-Chi Chou, Ying-Shan Su, Yu-Chun Lin, Cheng-Lung Sung, Hong-Jie Dai, Irene Tzu-Hsuan Yeh, Wei Ku, Ting-Yi Sung, Wen-Lian Hsu. BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features. bmcbi, 8, 2007. [doi]
- Hsieh-Chuan Hung, Richard Tzong-Han Tsai, Wen-Lian Hsu. Identifying Protein Interaction Abstracts with Contextual Bag of Words. AAAI 2007: 1870-1871
- Chun-Nan Hsu, Jin-mei Lai, Chia-Hung Liu, Huei-Hun Tseng, Chih-Yun Lin, Kuan-Ting Lin, Hsu-Hua Yeh, Ting-Yi Sung, Wen-Lian Hsu, Li-Jen Su, Sheng-An Lee, Chang-Han Chen, Gen-Cher Lee, D. T. Lee, Yow-Ling Shiue, Chang-Wei Yeh, Chao-Hui Chang, Cheng-Yan Kao, Chi-Ying F. Huang. Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online). bmcbi, 8, 2007. [doi]
- Chang-Chih Tseng, Chun-Hung Lu, Wen-Lian Hsu. A Mobile Environment for Chinese Language Learning. hci 2007: 485-489 [doi]
- Richard Tzong-Han Tsai, Hong-Jie Dai, Hsi-Chuan Hung, Ryan T. K. Lin, Wen-Chi Chou, Ying-Shan Su, Min-Yuh Day, Wen-Lian Hsu. BESearch: A Supervised Learning Approach to Search for Molecular Event Participants. iri 2007: 412-417 [doi]
2006
- Ching-Tai Chen, Hsin-Nan Lin, Kuen-Pin Wu, Ting-Yi Sung, Wen-Lian Hsu. A Knowledge-Based Approach to Protein Local Structure Prediction. apbc 2006: 257-266 [doi]
- Chun-Hung Lu, Guey-Fa Chiou, Min-Yuh Day, Chorng-Shyong Ong, Wen-Lian Hsu. Using Instant Messaging to Provide an Intelligent Learning Environment. its 2006: 575-583 [doi]
- Min-Yuh Day, Chun-Hung Lu, Chorng-Shyong Ong, Shih-Hung Wu, Wen-Lian Hsu. Integrating genetic algorithms with conditional random fields to enhance question informer prediction. iri 2006: 414-419
- Tzong-Han Tsai, Wen-Chi Chou, Shih-Hung Wu, Ting-Yi Sung, Jieh Hsiang, Wen-Lian Hsu. Integrating linguistic knowledge into a conditional random fieldframework to identify biomedical named entities. eswa, 30(1):117-128, 2006. [doi]
- Richard Tzong-Han Tsai, Hong-Jie Dai, Hsieh-Chuan Hung, Cheng-Lung Sung, Min-Yuh Day, Wen-Lian Hsu. Chinese word segmentation with minimal linguistic knowledge: An improved conditional random fields coupled with character clustering and automatically discovered template matching. iri 2006: 274-279
- Kuen-Pin Wu, Jia-Ming Chang, Jun-Bo Chen, Chi-Fon Chang, Wen-Jin Wu, Tai-Huang Huang, Ting-Yi Sung, Wen-Lian Hsu. RIBRA - An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem. jcb, 13(2):229-244, 2006. [doi]
- Richard Tzong-Han Tsai, Cheng-Lung Sung, Hong-Jie Dai, Hsieh-Chuan Hung, Ting-Yi Sung, Wen-Lian Hsu. NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition. bmcbi, 7(S-5), 2006. [doi]
- Ching-Tai Chen, Hsin-Nan Lin, Ting-Yi Sung, Wen-Lian Hsu. Hyplosp: a Knowledge-based Approach to Protein Local Structure Prediction. jbcb, 4(6):1287-1308, 2006. [doi]
- Chia-Wei Wu, Wen-Lian Hsu. Web Directory Integration Using Conditional Random Fields. webist 2006: 540-543 [doi]
- Richard Tzong-Han Tsai, Shih-Hung Wu, Wen-Chi Chou, Yu-Chun Lin, Ding He, Jieh Hsiang, Ting-Yi Sung, Wen-Lian Hsu. Various criteria in the evaluation of biomedical named entity recognition. bmcbi, 7:92, 2006. [doi]
- Sheng-Cheng Hsu, Min-Yuh Day, Shih-Hung Wu, Wing-Kwong Wong, Wen-Lian Hsu. Designing a Tutoring Agent for Facilitating Collaborative Learning with Instant Messaging. its 2006: 689-691 [doi]
2005
- Kuen-Pin Wu, Jia-Ming Chang, Jun-Bo Chen, Chi-Fon Chang, Wen-Jin Wu, Tai-Huang Huang, Ting-Yi Sung, Wen-Lian Hsu. RIBRA-An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem. recomb 2005: 103-117 [doi]
- Min-Yuh Day, Tzong-Han Tsai, Cheng-Lung Sung, Cheng-Wei Lee, Shih-Hung Wu, Chorng-Shyong Ong, Wen-Lian Hsu. A knowledge-based approach to citation extraction. iri 2005: 50-55 [doi]
- Chun-Hung Lu, Chia-Wei Wu, Shih-Hung Wu, Guey-Fa Chiou, Wen-Lian Hsu. Ontological Support in Modeling Learners Problem Solving Process. ETS, 8(4):64-74, 2005. [doi]
- Hao-Chuan Wang, Chun-Hung Lu, Jun-Yi Yang, Hsin-Wen Hu, Guey-Fa Chiou, Yueh-Tzu Chiang, Wen-Lian Hsu. An Empirical Exploration of Using Wiki in an English as a Second Language Course. icalt 2005: 155-157 [doi]
- Chia-Wei Wu, Tzong-Han Tsai, Wen-Lian Hsu. Learning to Integrate Web Taxonomies with Fine-Grained Relations: A Case Study Using Maximum Entropy Model. airs 2005: 190-205 [doi]
- Tsung-Han Tsai, Chia-Wei Wu, Hsieh-Chuan Hung, Yu-Chun Wang, Ding He, Yi-Feng Lin, Cheng-Wei Lee, Ting-Yi Sung, Wen-Lian Hsu. Enhance Genomic IR with Term Variation and Expansion: Experience of the IASL Group at Genomic Track 2005. trec 2005: [doi]
- Wen-Ting Lin, Kuen-Pin Wu, Wei-Neng Hung, Yi-Hwa Yian, Yet-Ran Chen, Yu-Ju Chen, Ting-Yi Sung, Wen-Lian Hsu. MassTRAQ: a Fully Automated Tool for iTRAQ-labeled Protein Quantification. csb 2005: 157-158 [doi]
- Min-Yuh Day, Chun-Hung Lu, Jin-Tan David Yang, Guey-Fa Chiou, Chorng-Shyong Ong, Wen-Lian Hsu. Designing an Ontology-Based Intelligent Tutoring Agent with Instant Messaging. icalt 2005: 318-320 [doi]
- Sheng-Cheng Hsu, Shih-Hung Wu, Wing-Kwong Wong, Hsi-Hsun Yang, Wen-Lian Hsu. The Design of a Diagnosis System for Problem Posing. icalt 2005: 776-777 [doi]
- Emily Chia-Yu Su, Allan Lo, Chin-chin Lin, Fu Chang, Wen-Lian Hsu. A Novel Approach for Prediction of Multi-Labeled Protein Subcellular Localization for Prokaryotic Bacteria. csb 2005: 79-82 [doi]
- Wen-Lian Hsu. A Linear Time Algorithm for Finding a Maximal Planar Subgraph Based on PC-Trees. cocoon 2005: 787-797 [doi]
- Hsin-Nan Lin, Jia-Ming Chang, Kuen-Pin Wu, Ting-Yi Sung, Wen-Lian Hsu. HYPROSP II-A knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence. bioinformatics, 21(15):3227-3233, 2005. [doi]
- Hsin-Nan Lin, Kuen-Pin Wu, Jia-Ming Chang, Ting-Yi Sung, Wen-Lian Hsu. GANAA Genetic Algorithm for NMR Backbone Resonance Assignment. csb 2005: 218-219 [doi]
2004
2003
- Wei-Fu Lu, Wen-Lian Hsu. A Test for the Consecutive Ones Property on Noisy Data - Application to Physical Mapping and Sequence Assembly. jcb, 10(5):709-735, 2003. [doi]
- Wei-Fu Lu, Wen-Lian Hsu. A Clustering Algorithm for Interval Graph Test on Noisy Data. wea 2003: 195-208 [doi]
- Kuen-Pin Wu, Hsin-Nan Lin, Ting-Yi Sung, Wen-Lian Hsu. A New Similarity Measure among Protein Sequences. csb 2003: 347-352 [doi]
- Shih-Hung Wu, Tzong-Han Tsai, Wen-Lian Hsu. Text categorization using automatically acquired domain ontology. iral 2003: 138-145 [doi]
- Shih-Hung Wu, Tzong-Han Tsai, Wen-Lian Hsu. Domain Event Extraction and Representation with Domain Ontology. ijcai 2003: 33-38 [doi]
- Wen-Lian Hsu, Ross M. McConnell. PC trees and circular-ones arrangements. TCS, 296(1):99-116, 2003. [doi]
2002
- Jia-Lin Tsai, Wen-Lian Hsu. Applying an NVEF Word-Pair Identifier to the Chinese Syllable-to-Word Conversion Problem. COLING 2002: [doi]
- Chiu-Chen Hsieh, Tzong-Han Tsai, David Wible, Wen-Lian Hsu. Exploiting Knowledge Representation in an Intelligent Tutoring System for English Lexical Errors. ICCE 2002: 115-116
- LiongYu Tu, Wen-Lian Hsu, Shih-Hung Wu. A Cognitive Student Model - An Ontological Approach. ICCE 2002: 111-112
- Wen-Lian Hsu. A Simple Test for the Consecutive Ones Property. jal, 43(1):1-16, 2002. [doi]
- Chih-Wei Hue, Chien-Huei Kao, Ming Lo, Chien-Chih Chiang, LiongYu Tu, Wen-Lian Hsu. NTUs: An Intelligent Tutorial System Fosters Number Concepts through Computational Scaffolding. ICCE 2002: 80-84
- Shih-Hung Wu, Wen-Lian Hsu. SOAT: A Semi-Automatic Domain Ontology Acquisition Tool from Chinese Corpus. COLING 2002: [doi]
2001
2000
1999
1998
- Yi-Shiou Chen, Schy Chiou, Yuan-Kai Wang, Wen-Lian Hsu. Personal Browser. sigir 1998: 382 [doi]
- Wen-Lian Hsu, Ming-Yang Kao, editors, Computing and Combinatorics, 4th Annual International Conference, COCOON 98, Taipei, Taiwan, R.o.C., August 12-14, 1998, Proceedings. Volume 1449 of Lecture Notes in Computer Science, Springer, 1998.
1997
1995
1993
1992
1991
- Wen-Lian Hsu, Tze-Heng Ma. Substitution Decomposition on Chordal Graphs and Applications. sersc-isa 1991: 52-60
- Wen-Lian Hsu, Richard C. T. Lee, editors, ISA 91 Algorithms, 2nd International Sy,posium on Algorithms, Taipei, Republic of China, December 16-18, 1991, Proceedings. Volume 557 of Lecture Notes in Computer Science, Springer, 1991.
- Wen-Lian Hsu, Kuo-Hui Tsai. Linear Time Algorithms on Circular-Arc Graphs. ipl, 40(3):123-129, 1991.
1990
1989
- Csaba P. Gabor, Kenneth J. Supowit, Wen-Lian Hsu. Recognizing circle graphs in polynomial time. JACM, 36(3):435-473, 1989. [doi]
- Wei Kuan Shih, Wen-Lian Hsu. An O(n log n+m log log n) Maximum Weight Clique Algorithm for Circular-Arc Graphs. ipl, 31(3):129-134, 1989.
- Wei Kuan Shih, Wen-Lian Hsu. An O(n:::1.5:::) algorithm to color proper circular arcs. DAM, 25(3):321-323, 1989. [doi]
- Wei Kuan Shih, Wen-Lian Hsu. An O(n log n + m log log n) maximum weight clique algorithm for circular-arc graphs. ipl, 32(3):129-134, 1989. [doi]
1988
1987
1986
1985
1982
1981