Journal: Briefings in Bioinformatics

Volume 20, Issue 6

1957 -- 1971Rajeev K. Azad, Vladimir Shulaev. Metabolomics technology and bioinformatics for precision medicine
1972 -- 1980Juan Wang, Maozu Guo. A review of metrics measuring dissimilarity for rooted phylogenetic networks
1981 -- 1996Jeff Gauthier, Antony T. Vincent, Steve J. Charette, Nicolas Derome. A brief history of bioinformatics
1997 -- 2008Clare Horscroft, Sarah Ennis, Reuben J. Pengelly, Timothy J. Sluckin, Andrew Collins. Sequencing era methods for identifying signatures of selection in the genome
2009 -- 2027Siyu Han, Yanchun Liang 0001, Qin Ma 0003, Yangyi Xu, Yu Zhang, Wei Du 0002, Cankun Wang, Ying Li 0004. LncFinder: an integrated platform for long non-coding RNA identification utilizing sequence intrinsic composition, structural information and physicochemical property
2028 -- 2043Dai-Hai Nguyen, Canh Hao Nguyen, Hiroshi Mamitsuka. Recent advances and prospects of computational methods for metabolite identification: a review with emphasis on machine learning approaches
2044 -- 2054Adam McDermaid, Brandon Monier, Jing Zhao, Bingqiang Liu, Qin Ma 0003. Interpretation of differential gene expression results of RNA-seq data: review and integration
2055 -- 2065Johannes Brägelmann, Justo Lorenzo Bermejo. A comparative analysis of cell-type adjustment methods for epigenome-wide association studies based on simulated and real data sets
2066 -- 2087Chen Wang, Lukasz A. Kurgan. Review and comparative assessment of similarity-based methods for prediction of drug-protein interactions in the druggable human proteome
2088 -- 2097Xun Chen, Jason Kost, Dawei Li. Comprehensive comparative analysis of methods and software for identifying viral integrations
2098 -- 2115Wenliang Zhang, Haiyue Zhang, Huan Yang, Miaoxin Li, Zhi Xie, Weizhong Li 0001. Computational resources associating diseases with genotypes, phenotypes and exposures
2116 -- 2129Kleber Padovani de Souza, João Carlos Setubal, André Carlos Ponce de Leon Ferreira de Carvalho, Guilherme Oliveira, Annie Chateau, Ronnie Alves. Machine learning meets genome assembly
2130 -- 2140Fulong Yu, Fei Quan, Jinyuan Xu, Yan Zhang, Yi Xie, Jingyu Zhang, Yujia Lan, Huating Yuan, Hongyi Zhang, Shujun Cheng, Yun Xiao 0001, Xia Li 0004. Breast cancer prognosis signature: linking risk stratification to disease subtypes
2141 -- 2149Hongyan Yin, Mengwei Li, Lin Xia, Chaozu He, Zhang Zhang 0002. Computational determination of gene age and characterization of evolutionary dynamics in human
2150 -- 2166Fuyi Li, Yanan Wang, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, A. Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song. Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods
2167 -- 2184Misagh Naderi, Jeffrey Mitchell Lemoine, Rajiv Gandhi Govindaraj, Omar Kana, Wei Pan Feinstein, Michal Brylinski. Binding site matching in rational drug design: algorithms and applications
2185 -- 2199Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song. Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework
2200 -- 2216Fentaw Abegaz, Kridsadakorn Chaichoompu, Emmanuelle Génin, David W. Fardo, Inke R. König, Jestinah M. Mahachie John, Kristel Van Steen. Principals about principal components in statistical genetics
2217 -- 2223Zhiyu Hao, Li Jiang, Jin Gao, Jinhua Ye, Jingli Zhao, Shuling Li, Runqing Yang. Quick approximation of threshold values for genome-wide association studies
2224 -- 2235Saurav Mallik, Gabriel J. Odom, Zhen Gao, Lissette Gomez, Xi Chen, Lily Wang. An evaluation of supervised methods for identifying differentially methylated regions in Illumina methylation arrays
2236 -- 2252Wan-Yu Lin, Ching-Chieh Huang, Yu-Li Liu, Shih-Jen Tsai, Po-Hsiu Kuo. Polygenic approaches to detect gene-environment interactions when external information is unavailable
2253 -- 2266Min Li 0007, Hao Gao, Jianxin Wang, Fang-Xiang Wu. Control principles for complex biological networks
2267 -- 2290Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li 0013, Kuo-Chen Chou, Jiangning Song. Large-scale comparative assessment of computational predictors for lysine post-translational modification sites
2291 -- 2298Yan Zhao, Yujie Ning, Feng Zhang, Miao Ding, Yan Wen, Liang Shi, Kunpeng Wang, Mengnan Lu, Jingyan Sun, Menglu Wu, Bolun Cheng, Mei Ma, Lu Zhang, Shiqiang Cheng, Hui Shen, Qing Tian, Xiong Guo, Hong-Wen Deng. PCA-based GRS analysis enhances the effectiveness for genetic correlation detection
2299 -- 2305Maciej Blaszczyk, Maciej Pawel Ciemny, Andrzej Kolinski, Mateusz Kurcinski, Sebastian Kmiecik. Protein-peptide docking using CABS-dock and contact information
2306 -- 2315Meng Zou, Rui Jin, Kin Fai Au. Revealing tumor heterogeneity of breast cancer by utilizing the linkage between somatic and germline mutations
2316 -- 2326Taiyun Kim, Irene Rui Chen, Yingxin Lin, Andy Yi-Yang Wang, Jean Yee Hwa Yang, Pengyi Yang. Impact of similarity metrics on single-cell RNA-seq data clustering
2327 -- 2333Zhidong Tang, Xuecang Li, Jianmei Zhao, Fengcui Qian, Chenchen Feng, Yanyu Li, Jian Zhang, Yong Jiang, Yongsan Yang, Qiuyu Wang, Chunquan Li. TRCirc: a resource for transcriptional regulation information of circRNAs