| 385 | -- | 391 | Jiexin Zhang, Li Zhang, Kevin R. Coombes. Gene sequence signatures revealed by mining the UniGene affiliation network |
| 392 | -- | 399 | Xiang Guo, Kay Tatsuoka, Rongxiang Liu. Histone acetylation and transcriptional regulation in the genome of ::::Saccharomyces cerevisiae:::: |
| 400 | -- | 406 | Jussi Salmi, Robert Moulder, Jan-Jonas Filén, Olli Nevalainen, Tuula A. Nyman, Riitta Lahesmaa, Tero Aittokallio. Quality classification of tandem mass spectrometry data |
| 407 | -- | 412 | András Kocsor, Attila Kertész-Farkas, László Kaján, Sándor Pongor. Application of compression-based distance measures to protein sequence classification: a methodological study |
| 413 | -- | 422 | Yao-ming Huang, Christopher Bystroff. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions |
| 423 | -- | 429 | Kenzie D. MacIsaac, D. Benjamin Gordon, Lena Nekludova, Duncan T. Odom, Joerg Schreiber, David K. Gifford, Richard A. Young, Ernest Fraenkel. A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data |
| 430 | -- | 437 | Tilman Sauer, Ekaterina Shelest, Edgar Wingender. Evaluating phylogenetic footprinting for human-rodent comparisons |
| 438 | -- | 444 | Joseph M. Volpe, Lindsay G. Cowell, Thomas B. Kepler. SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations |
| 445 | -- | 452 | Zizhen Yao, Zasha Weinberg, Walter L. Ruzzo. CMfinder - a covariance model based RNA motif finding algorithm |
| 453 | -- | 459 | Elodie Duprat, Marie-Paule Lefranc, Olivier Gascuel. A simple method to predict protein-binding from aligned sequences - application to MHC superfamily and ß2-microglobulin |
| 460 | -- | 465 | Simon W. Ginzinger, Johannes Fischer. SimShift: Identifying structural similarities from NMR chemical shifts |
| 466 | -- | 471 | Lexin Li. Survival prediction of diffuse large-B-cell lymphoma based on both clinical and gene expression information |
| 472 | -- | 476 | Baolin Wu. Differential gene expression detection and sample classification using penalized linear regression models |
| 477 | -- | 484 | Eugene P. van Someren, B. L. T. Vaes, W. T. Steegenga, A. M. Sijbers, K. J. Dechering, Marcel J. T. Reinders. Least absolute regression network analysis of the murine osteoblast differentiation network |
| 485 | -- | 492 | Siddhartha Basu, Erich Bremer, Chun Zhou, Daniel F. Bogenhagen. MiGenes: a searchable interspecies database of mitochondrial proteins curated using gene ontology annotation |
| 493 | -- | 494 | Jörg Rothgänger, Markus Weniger, Thomas Weniger, Alexander Mellmann, Dag Harmsen. Ridom TraceEdit: a DNA trace editor and viewer |
| 495 | -- | 496 | Derek Huntley, Angela Baldo, Saurabh Johri, Marek J. Sergot. SEAN: SNP prediction and display program utilizing EST sequence clusters |
| 497 | -- | 499 | Tiziana Castrignanò, Paolo D Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole. GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags |
| 500 | -- | 503 | Peter Steffen, Björn Voß, Marc Rehmsmeier, Jens Reeder, Robert Giegerich. RNAshapes: an integrated RNA analysis package based on abstract shapes |
| 504 | -- | 506 | John Eargle, Dan Wright, Zaida Luthey-Schulten. ::::Multiple Alignment:::: of protein structures and sequences for VMD |
| 507 | -- | 508 | Jeffrey T. Leek, Eva Monsen, Alan R. Dabney, John D. Storey. EDGE: extraction and analysis of differential gene expression |
| 509 | -- | 511 | Michael Mueller, Anuj Goel, Manjula Thimma, Nicholas J. Dickens, Timothy J. Aitman, Jonathan Mangion. eQTL Explorer: integrated mining of combined genetic linkage and expression experiments |
| 512 | -- | 513 | B. L. Browning. FLOSS: flexible ordered subset analysis for linkage mapping of complex traits |
| 514 | -- | 515 | Henning Schmidt, Mats Jirstrand. Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology |